Slit010706.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:6045505-6073008[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.42 24 5.5 0.3 1 23 1186 1209 1186 1209 0.95 2 10 0.021 1.2 9.6 0.4 1 23 1217 1239 1217 1239 0.95 3 10 1.2 68 4.1 0.8 1 21 1243 1263 1243 1265 0.82 4 10 9.4 5.3e+02 1.2 0.5 1 11 1271 1281 1271 1284 0.92 5 10 0.00052 0.029 14.7 0.7 1 23 1289 1311 1289 1311 0.98 6 10 0.00019 0.011 16.0 4.4 1 21 1320 1340 1320 1345 0.94 7 10 0.0011 0.061 13.7 2.4 1 23 1353 1376 1353 1376 0.90 8 10 0.024 1.3 9.4 0.4 1 23 1382 1405 1382 1405 0.95 9 10 0.035 2 8.9 0.3 3 19 1418 1434 1416 1435 0.89 10 10 0.073 4.1 7.9 0.9 1 23 1448 1471 1448 1471 0.97
Sequence Information
- Coding Sequence
- atgaatgaaataaacataaatatagaaGGTTATAACGTGAATGGAATATGCGTGGGGTGTTTAAACTATAATCGTCGAATGTTTTACAATTCAGACATCAAAGAATGTTTTCGACTGCTTGGAAATATTGATGTGCCAGACGGTTTAGAAATCCAGGTGTGCTGGGAATGCCTGGCGCGTGTCAAGTCTGCCATCAGATTTAGGAAGCAGATACTGCAGTCTTACGACTTCTTAATCAAATATTCTAAAGAGCATACCTTCTTGGACTCTCCGCACGATTTTGAACCGCACGCAACTAAATCTTTACTTAAGACAGAAGTTTTTGTTGAACAAGTAAAGGAGGTGAAAGAAGGTGTCGAAGACGAGAAAGAAGTACTGGTCAAAGATGAGGAGCACCAACTGGAGTATACTTTTGGCAATGATGAACGTCACCCGTCCTCTTCATCTTCTGATCCTGAAGATACTAGTCAAAACCCTTTAACCATACTATGGGAAGTTCATGATAATGAAAACGAAGTCCAAAAAATATCTGATCCCCTCGCTGAAGATGAAAGCAATCACTCTAgttcagaaatattatttaaagtcgAAGAGGTGTTAGAAGGCTCTAATTTAAATGGAGCAACTTCACCTACTTTAGAACTGTTAATGCCATCATCATGTATCCAATCTTGCGACACTGAATTATCTCctaaacatataggtatagaTAGCCATAAAAATTCATCTACTTCTGACAAGAGAACGACAAGAAAACGAGTGAGACATACAGAAGAATGGCAGGATGTGAAACGTAAACGTCTTAGGAATTTAGGAAAGAAATACATAACGAAAAAAGGCAAAGAAGTAGATGAAAAATCTATGGGCGCACCTTGCAAATGTCACTATAAATGCTATGACAGAATATCTGAAGAACAAAGATTAGAATGCTTTCAACATTTTTGGCAACTAGGAGATAGAGTGCAGCAGTGgcatttcattataaaatatacagagaaaatgaataaaaaacggTGTACGAATATCCATATTGATAACCGTAGAAAAtacacttttaaatattatctgcCGATACTTGCCGGTTCTAGCGAAGCGACCAGTTCTAGCAAAGTCCACAATTCTAGCGATACAACCATTTCTAGGGAAACCGACTGCGAGAAAACTGCAGTATGccaaattatgtttataaatactcTCGCCATTTCTGACCGCATAATAAAGACTGCTTGGGCGAAGAATAACGGAACTGCTAATTTAGAAGACAGACGAGGTCGTCATGGGAATCGAATCCGTAAGAAAATTAGCGTTTGTGAAGAAATACAAATGGATGAAAAGCCCCAAGAAATAACGACTGACATCTCCGAACTAAATAACATGTCTGATCCTCTTACAGAAGATGTTGATAGCAATGACTCGAGTACGTTTTCTTTGGAAGTTTCTCAAAGTATGGAAAACTCACAGGTAAAGCTTGAAAAGCTAATAGAGGACGCTCTAATGAATGAATCAACTTCAGAACTTTTAGTGTCAACTCCCATACCATCTCCTGCCAATAGCGAATCCATCTGCGACAGTGGACTCTCTCTTAATCTTAATACAAAAGTAGATACCACTAAAAAGTCATCTACTTCTGACAAGAGAACGACAAGAAAACGAGTGAAGCGTACAGAAGAATGGCGAGATGTAAAACGTAAACGTCTTAGAAATTTAGGAAAGAAATACATAACGAAAAAAGGCAAAGAAGTAGATGAAAAATCTATGGGAGCACCTTGCGAATGTCACTATAAATGCTATGACAGAATATCTGAAGAACAAAGATTAGAATGCTTTAAACAATTTTGGCAACTAGGAGATAGAGTGCAGCAGTGgcatttcattataaaatatacagagaaaatgaataaaaaatcgtGTACGAATATCCATATTAATAACCGTAGAAAAtacacttttaaatattatctgcCGATACTTGCCGGTTCTAGCGAAGCGACCAGTAGCAAAGTCCCCAATTCTAACGATACACCCAGTTCTAGCGAAACCGATTGCGAAAAAATTGCAGTATGccaaattatgtttataaatactcTCGCCATTTCTGACCGCATAATAAAGACTGCTTGGGCGAAGAATAACGGAACTGCTAATTTAGAAGACAGACGAGGTCGTCATGGGAATCGAATCCGTAAGAAAATTAGCGTTTGTGAAGAAATGCAGATGGATGAAGAGACCCTAGAAATAACGACTGACATCTCCGAACTAAATAACATGTCTGATCCTCTTACAGAAGATGTTGATAGCAATGACTTGAGTGCGTTTTCTTTGGAAGTTTCTCAAAGTATGGAAAACCCACAGATAAAGCTTGAAAAGCTAATAGAGGACGCTCTACTGAACGAATCAACTTCAGAACTTTCAGTGTCAACTCCCATACCATCTCCTGCCAATAGCGAATCCATCTGCGACAGTGGACTCTCTCTTAATCTTAATACAAAAGTAGATACCACTAAAAAGTCATCTACTTCCGACAAGAGAACGACAAGAAAACGAGTGAAGCGTACAGAAGAATGGCGAGATGTTAAACGTAAACGTCTTAGAAATTTAGGAAAGAAATACATAACGAAAAAAGGCAAAGAAGTAGATGAAAAATCTATGGGAGCACCTTGCGAATGTCACTATAAATGCTATGACAGAATATCTGAAGAACAAAGATTAgaatgttttaaacaattttggCAACTAGGAGATAGAGTGCAGCAATGgcatttcattataaaatatacagagaaaatgaataaaaaacggTGTATGAATATCCATATTGATAACCGTAGAAAAtacacttttaaatattatctgcCGATACTTGCCGCTTCTAGCAAAGTCCACAATTCTAGCGATACAACCAGTTCTAGCGAAACTGACTGCGAGAAAATTGCAGTATGTCAAATTATGTTTATCAATACTCTGGCCATTTCTGGCCGCATAATAAAGACTGCTTGGGCGAAGAATAACGGAACTGCTAATTTGGAAGACAGACGGGGTCGCCACGGGAATCATAGAGTCATTAAGAATACCGCAATGGAAAATAGCGTTTGTGACCATGTCCGGACATTTACACCATCTAGATCGCTTCGCAGAAAGAGccaaaaaatctatttaaaagacctaaatttgacaaaaatgtttAAGTTGTACCTCAACTGGTTTGACCCCAAAAAATATCTCATaaggaACGTGGACATAAAAGAAGAAGCACTAGAAGATACATATTTTGAGGATATACCAGGGAAAAATGAGGTGTCTTCCGATGAGGATGTCCAGCTGTCCAAACTTAAAGAGGAGACAGAACGAGACAAGAAGAGAAAGAAGAGTGAAAAGAAGAAGCAAaagTTAGCCCCAAAAAAAGATAAACAGAAGAAAGAGAAAAATGTTGAAAAGAAGAATAGGAAATTAAAGAATCTACCGGGAGATTTAGTAGAACTGTACACAATGTCCAATGATGAGATGTGGGTGATACGGTGGGAGGACCTGAACAGCAAGGAGTTTCAGAAACTTAAATACAGGTGTGATACTTGCATCATAGCATTTAATACAGAGAAATTAATGCAAGACCATTTAAATGGAAAACATCAGCCGAAAGGTGAGAACTGTCACCAGTGTCCAATTTGCGAGGCATATTTCCTAACTAAAGATAATTTGTCCGCTCATAAAGCGTTGCACCAGCAAGGGTACAAGTGCAAGGAGTGCGGCTTCAATACTGGGTTAAAGAAGCGTATGATGAAGCATGTAGGTGAACATAAGACTGGAGATAGCTTTACTTGCAGCTCTTGTGGGTCTAGTTTTAGAGTAATCCACGACGGTCTATCCTACCCCTGTCCAATATGCGGCAAACTGTTCCAATGGAAGCGAAATCTCTACCGACACACTCGCAACCATAGAGAGAGAGCCGCCGGCGCTCTACATGAATGTAGAGACTGTGGCAAGACATTCGCTAGTAGAGATTGCTACAATAATCATATGCGACTGAGCAAGCGACATGTTGCTGATGAAGCGCTCCAACACGCTTGCACATACTGCGATAAGAAGTTCCCGACAAAATGGTGTCTTACTGACCATGTGGATTGGGATCATCTCAAGCGCATCAAATATCAATGTAGCTCCTGttttaaaccCTTTAAAACTGCTAAAATATTGGTCGCCCATGTGAAGAATATTCACGAGGGCAAGAAGAAAGAAGTCGAGGGTGAACACCTATGCGAAATATGCGGGAAATCTTACAGGACTGTAAAACGGCTCAAAGGCCACGTGTGGGCGATGCACACGAAGCGATCAAACAGCAAGGTATACAAGTGCAAGCTCTGTCCGGCTACATTCATGTGGCAGACCAGTATATACAAGCACATGAAGATGATGCACGATAATAAGAAGGCTAAGACACAACGGGCCGCCCCACCAGTGAAAAAAGAAGAgccttacccgggaatcgaactagCGAACCGAATGCAATATTTCCAACAAAATCTTTCAGGCAATCTCAACATAGTACATATACAACCAATTGAAATTGGAcagaatatagtttttaaataa
- Protein Sequence
- MNEININIEGYNVNGICVGCLNYNRRMFYNSDIKECFRLLGNIDVPDGLEIQVCWECLARVKSAIRFRKQILQSYDFLIKYSKEHTFLDSPHDFEPHATKSLLKTEVFVEQVKEVKEGVEDEKEVLVKDEEHQLEYTFGNDERHPSSSSSDPEDTSQNPLTILWEVHDNENEVQKISDPLAEDESNHSSSEILFKVEEVLEGSNLNGATSPTLELLMPSSCIQSCDTELSPKHIGIDSHKNSSTSDKRTTRKRVRHTEEWQDVKRKRLRNLGKKYITKKGKEVDEKSMGAPCKCHYKCYDRISEEQRLECFQHFWQLGDRVQQWHFIIKYTEKMNKKRCTNIHIDNRRKYTFKYYLPILAGSSEATSSSKVHNSSDTTISRETDCEKTAVCQIMFINTLAISDRIIKTAWAKNNGTANLEDRRGRHGNRIRKKISVCEEIQMDEKPQEITTDISELNNMSDPLTEDVDSNDSSTFSLEVSQSMENSQVKLEKLIEDALMNESTSELLVSTPIPSPANSESICDSGLSLNLNTKVDTTKKSSTSDKRTTRKRVKRTEEWRDVKRKRLRNLGKKYITKKGKEVDEKSMGAPCECHYKCYDRISEEQRLECFKQFWQLGDRVQQWHFIIKYTEKMNKKSCTNIHINNRRKYTFKYYLPILAGSSEATSSKVPNSNDTPSSSETDCEKIAVCQIMFINTLAISDRIIKTAWAKNNGTANLEDRRGRHGNRIRKKISVCEEMQMDEETLEITTDISELNNMSDPLTEDVDSNDLSAFSLEVSQSMENPQIKLEKLIEDALLNESTSELSVSTPIPSPANSESICDSGLSLNLNTKVDTTKKSSTSDKRTTRKRVKRTEEWRDVKRKRLRNLGKKYITKKGKEVDEKSMGAPCECHYKCYDRISEEQRLECFKQFWQLGDRVQQWHFIIKYTEKMNKKRCMNIHIDNRRKYTFKYYLPILAASSKVHNSSDTTSSSETDCEKIAVCQIMFINTLAISGRIIKTAWAKNNGTANLEDRRGRHGNHRVIKNTAMENSVCDHVRTFTPSRSLRRKSQKIYLKDLNLTKMFKLYLNWFDPKKYLIRNVDIKEEALEDTYFEDIPGKNEVSSDEDVQLSKLKEETERDKKRKKSEKKKQKLAPKKDKQKKEKNVEKKNRKLKNLPGDLVELYTMSNDEMWVIRWEDLNSKEFQKLKYRCDTCIIAFNTEKLMQDHLNGKHQPKGENCHQCPICEAYFLTKDNLSAHKALHQQGYKCKECGFNTGLKKRMMKHVGEHKTGDSFTCSSCGSSFRVIHDGLSYPCPICGKLFQWKRNLYRHTRNHRERAAGALHECRDCGKTFASRDCYNNHMRLSKRHVADEALQHACTYCDKKFPTKWCLTDHVDWDHLKRIKYQCSSCFKPFKTAKILVAHVKNIHEGKKKEVEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSNSKVYKCKLCPATFMWQTSIYKHMKMMHDNKKAKTQRAAPPVKKEEPYPGIELANRMQYFQQNLSGNLNIVHIQPIEIGQNIVFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -