Basic Information

Insect: Spodoptera litura
Gene Symbol: ush
Assembly: GCA_002706865.1
Location: NC:1279821-1391248[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0035 0.2 12.0 0.2 1 20 139 158 139 160 0.95

2 9 7.7e-05 0.0043 17.3 0.9 1 23 198 220 198 220 0.98

3 9 0.048 2.7 8.5 0.6 3 21 251 269 250 270 0.92

4 9 0.017 0.97 9.9 3.9 2 21 513 532 512 533 0.95

5 9 0.0052 0.29 11.5 0.2 3 20 562 579 560 581 0.90

6 9 1.5 85 3.8 0.0 2 23 609 630 608 630 0.93

7 9 0.0075 0.42 11.0 1.3 1 23 636 658 636 658 0.99

8 9 0.39 22 5.6 0.7 1 23 698 721 698 721 0.95

9 9 0.16 9.1 6.8 0.7 2 20 755 773 755 775 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0035	0.2	12.0	0.2	1	20	139	158	139	160	0.95
2	9	7.7e-05	0.0043	17.3	0.9	1	23	198	220	198	220	0.98
3	9	0.048	2.7	8.5	0.6	3	21	251	269	250	270	0.92
4	9	0.017	0.97	9.9	3.9	2	21	513	532	512	533	0.95
5	9	0.0052	0.29	11.5	0.2	3	20	562	579	560	581	0.90
6	9	1.5	85	3.8	0.0	2	23	609	630	608	630	0.93
7	9	0.0075	0.42	11.0	1.3	1	23	636	658	636	658	0.99
8	9	0.39	22	5.6	0.7	1	23	698	721	698	721	0.95
9	9	0.16	9.1	6.8	0.7	2	20	755	773	755	775	0.92

Sequence Information

Coding Sequence: atgttattgtggTTGCGGTATCTGAAGCAGCTGGAAGTGGCGGCCGGGGACCCGCCGCCAGGTGGCGCTGTCGACTTCAAAACAATGTGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCCAGCTCAGAGGGGGAGCGACCCGCGTCCAGCGGTGGCGCCTCACCAGCCTCGGGAGGCTCACCTGCTGCCTCACCACCTCGCTTACGCCTCAACACCAGTCTTGCTACAGACCCTGCGCTGGCACCGCAGGCAACGGCGCTCAAACATGAGCCGCCCTCACCATCTCCTCCTCCGCCACCAGCAGCAACACCACAAGCTGCGAGAGACTACCTCGCCTTAACGGCGGCAGCCTTCCCAGGGCTATTCCCAGGGTCTGGTCCTCCGAGCTATGTATGCAAACCTTGTGGTATACGCTACTCATCGTTAAGTACGCTACAAGCACATCAAGAACATTATTGTTCAAATAGACTTCCGAAACCCACAGAAGGGCCGAATGCGTCATCCGATCCTGTCGCAGATGAGTCCAGCAGTGATGCTAAAACTCCGCGACCTGCTGGCAAGCAGTACGCTTGCACGTATTGCTCATATAGTGCAGATAAAAAAGTGAGCTTGAACCGCCACATGCGGATGCATTCCTCATCTCCGGTCAGCAGTGGTACTCCAGCGCCGACGCCGACCTCTAACGGAGAAGTCACAGACGGTCCACCGGTACAAGACCGTTACTGCGCTGATTGTGATATTCGCTTTAGCTCAATAAAAACATATCGTGCTCATAAACAACACTATTGCAGCACGAGACAAGTCGTCAAACAAGCTTTGGCTGCAGCTCGGGGTGGCTCAGCAACGTCAGGGTCCGCCCCTCCTTCGCCTGGAGCCACACCACCGGCACAAAACCAAAACCAATACGCACTCGCGTTACCCACGAATCCTATTCTGATTGTACCGTATTCATTACTAAGGGGCGCCAGTACTCTCCCAGGGGCAACACTACCGGACCCAGACACGCCATGTTTTCTGTTACCAAATGGAACATTCCAACCAATCAGTCGGGCAATATCAAATATGAACTCTGATGGGAAAGAAACTGAGGTGTTAAAATCAGCCAACCGACCTCGAGAGCCTTCAAGAGATGGTGGTGTGACTCCATTAGATCTCAGTGTTCGGCGGTCCCCAGAATCAGTAGTCACTGATGAACATGAAAAAGAGAATAGAATACGGTCAACTACTCCTGAGCAAATAGTATGCGCTCCTTCTCTACCAGGATCTCCAGGAACGCCGTCTCCTTCACGGCGGTCTTCGTCACCAAGTGCAGAAAGTTCGCCAAAGCGACGGCGGCTAAACTCAAGAGGGCCGACTCCCAAACCACCAATTGTGCCGTCACCTCCTGAAGAGAAATTCGCGCCCATAGTTCCTCCTGCAATCTTGCCACCTGCCTTAGCATTACGCTTAGCATCAGAACTACCAGTAATTGGTGCATCTCCTCAAGTGCTTGTAAAACAGGGAGTTTCTAAATGCAAAGAATGCAACAtcgtattttgtaaatatgagaACTACCGCATACACAAGCGACATTATTGCTCATCTGGGGGTGGTGAGGAGCGCGCAAGTCCCGCGCCACCAGAGCCTGGCCCGCCGCCTCAGTACCGCCAACTGATCTGTCTCGCGTGTGGAATACATTTCAGTTCGCTGGACAACCTGACGACTCATCAGTCGTATTATTGCACTAAACGTGAGACTCGATCTCCTCGAAGTGTGCCTGAAGTTCCACGACCTACGTCAGGGTCAGAGGGAGGTTGGAAGTGTCCTTGCTGCGACGTGGTGTCCCCGACGGCAGCGGCAGCGCAGCGCCACATGGACGCGCACGCTGGTGTGAAGGCTTTCCGCTGCACCATATGTCGATACAGGGGCAACACGCTGCGAGGCATGCGCACGCACATACGTATGCACTTCAACAACAAGAAGCCTGCTGATTTGCAGGAAGAGAGCTACATCTCGTGCGTTTTAGAAGAGGACAGCCGTGAAGCGACTTCCCCGAGCCCAGCGGTGGGCGGCGGAGAGCGCGTGCACCGGTGCGGCAGCTGCGCGTACACGTCCACGTACCGCGGTAATGTCGTGCGACACGCGCGACTCGTCCACGCGACAGACGAGCCGGAAGAGGAACAGACGTCTCCCGTCCCTCCCCCCACTGTCGACATCAAGAAGGAACCAGAGACAGAACTCGAGGAAACTCCAAACTACTGCAAGTCTTGTGACATTTCCTTCAAATACGTCAACACTTATAAGGCTCACAAGCAGTTTTATTGTACTGCCAACAATCAAGATGCAACGGCTAACAATAATGTGCCCACGCCCGCGAGGGTCACAGACACGCCTGTGCTatga
Protein Sequence: MLLWLRYLKQLEVAAGDPPPGGAVDFKTMCEDEEWGNESEAMPGEPRTPSSEGERPASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATALKHEPPSPSPPPPPAATPQAARDYLALTAAAFPGLFPGSGPPSYVCKPCGIRYSSLSTLQAHQEHYCSNRLPKPTEGPNASSDPVADESSSDAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTDGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQNQYALALPTNPILIVPYSLLRGASTLPGATLPDPDTPCFLLPNGTFQPISRAISNMNSDGKETEVLKSANRPREPSRDGGVTPLDLSVRRSPESVVTDEHEKENRIRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRLNSRGPTPKPPIVPSPPEEKFAPIVPPAILPPALALRLASELPVIGASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSSGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRSVPEVPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYISCVLEEDSREATSPSPAVGGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPPPTVDIKKEPETELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTPARVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -