Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NC:638579-661608[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.053 3 8.3 1.2 1 21 410 430 410 431 0.93

2 7 0.43 24 5.5 1.3 1 23 445 467 445 467 0.98

3 7 0.0047 0.26 11.6 0.6 1 23 473 495 473 495 0.98

4 7 4.7e-05 0.0026 17.9 3.1 1 23 501 523 501 523 0.99

5 7 0.00062 0.035 14.4 0.3 1 23 529 551 529 551 0.96

6 7 0.0013 0.074 13.4 5.6 1 23 557 579 557 579 0.98

7 7 0.0016 0.089 13.1 4.3 2 23 605 627 604 627 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.053	3	8.3	1.2	1	21	410	430	410	431	0.93
2	7	0.43	24	5.5	1.3	1	23	445	467	445	467	0.98
3	7	0.0047	0.26	11.6	0.6	1	23	473	495	473	495	0.98
4	7	4.7e-05	0.0026	17.9	3.1	1	23	501	523	501	523	0.99
5	7	0.00062	0.035	14.4	0.3	1	23	529	551	529	551	0.96
6	7	0.0013	0.074	13.4	5.6	1	23	557	579	557	579	0.98
7	7	0.0016	0.089	13.1	4.3	2	23	605	627	604	627	0.94

Sequence Information

Coding Sequence: ATGGATTTTGTGAAAAGAGAGGACCAGAATGTCATGGACGATGATAATTACAAGTTTTACCTCGAAAGCCTGCAAAGGTCACATCACCTCGAACCAACGGATTACCAGCACTCTCCACTATCGATGGAGCAACTCCATCAAGCGATGCAATCGTCAGTAGCGAGTACAATCGTCCACAACCTAGAACTACCTCTGTCTCCTCGACAAATATCATCCTTAATGCTAAAAACGAATCATCTGCAACGGAACCTAAACTTCAACGAAGTTCCAGCTCACATGCAACGAAATATCACATCGGAATTGGATCTAGTGCATAATCTAAACGAACTACCTCAAAATCTAAATAGGCATGATGACTTATTAGGGCAGAATCTGAGCAGGAATCTAGATTTGTCTCTAAGATCTTTAGGATCCGATCTGGACCTTCAGAACAATTTAAGTCAACTGGCGCAGAATTTGAACGAGAATTTGACCGCGGATTTGAGTCGTATAAGCGATTTGAGAACAGATATGCCTCACGATTTAAGCCATGAAATAGATTTGTCGCATCATTTAAATAGGCCAAGTATGGATCAAGAGATTTTGGGCCAAGATGAGACGAGACGGACTCCCATAGTGATGCAGGATCCTCATATGTTGGATCAAAGTTTGGGGCCAAGGTTGGGGGCTCCGATGAATGTCCATGAACGGTTGGACCAACAGGAACATATGTTACCAATGCCATTTCATATTAAGTCGGAACAAGAAGATGATGGATATTTTTACGAAAATATCAATCCGGTCATCAACAGTGTTTCGAGTTTAAATgGTTTGACACCCGACCACACACAGCCACAACAACCTGTCCACCCAGACAACCAAATGTACGTATACAACACACATGTAAACGTTCCTGCGTTAAATTCCATAGACCTCTACTCTAGACCACAAAACTACGTTCaaaattacacaaacataaGAGAAAATCCACAAAATCTAGTCGTGCATAGGCAGTTTGAGAACGCTAGCCCTTACCAGGAAGATTTTAAAAAGTTACGCCAAGATGGCGGACTTAATAATGGCGCGAAAGAAAAATGTGAAGAGCCGAAAGAGAATTTGAAACCAACGGACGAAAATAAGATATACTATTCGGAGTACAGTCAGAATTTTTCCGAAGCAAAAAATGAGAACGATTCCAGCGTCCAAAATAAGATTACTGAAGATATTTCAATGAATATAAAAGGGCAGTATATTTGTTATAAGTGTAATGATGTTTTTCCCTCAAAAAGGGGGTTGAAACACCATTCAAAATCGTGTACTGATAACGATCAATTAGTAGAAAAAGTTGGGAAATTCAGTTGTAGTCAATGTGCATACAGATGTCAATCTCCCGCGATTTTAAAGATCCATGAACGAACGCATTCCGGAGAAAAGCCGTTCTCATGCACGTTCTGCGATTACAAATCTGGACAGAAGAATAATGTAGCTAAACATATCCTAGTTCATATGAAAGAGAAACCATTTAGGTGTCAGTACTGCGACTATAGATGTGCGCAGAAAAATAACTTAGTCGTTCACGAACGGACGCATACAGGATACAAGCCATTCGCGTGCCCATTTTGCGAATACAGAACGGTGCAGAAACCTAATTTAGTTAAGCATATGTATTTGCATACGGACCAAAAGCCTTTTAGTTGTGATATGTGTTCTTATAGATGTGTCCAAAAGACGAACCTAACAAAGCATAAACAGAGGCACTTAAATGAAAAAGAGggtgataaaattgacattaagAACCAAAGTAAACCTTATAGACCTCGACAGAAATCTGTAAAATGCCCCCACTGCCCTTACCGGTGTGTCCAAAAATCTAGCATGGAGAAACATCTCCAGTTCAAACATGGGACTCAAGAAGATTTTGAGAATGGCCTGAATCTAATGAAGAGTCCAGAAGACACGGAAAGTATAAATTTGAGTGTGAAAAAAGATTTTGAGTGCCAACAGAAAGATAGTGTAAGCGAACACtcatag
Protein Sequence: MDFVKREDQNVMDDDNYKFYLESLQRSHHLEPTDYQHSPLSMEQLHQAMQSSVASTIVHNLELPLSPRQISSLMLKTNHLQRNLNFNEVPAHMQRNITSELDLVHNLNELPQNLNRHDDLLGQNLSRNLDLSLRSLGSDLDLQNNLSQLAQNLNENLTADLSRISDLRTDMPHDLSHEIDLSHHLNRPSMDQEILGQDETRRTPIVMQDPHMLDQSLGPRLGAPMNVHERLDQQEHMLPMPFHIKSEQEDDGYFYENINPVINSVSSLNGLTPDHTQPQQPVHPDNQMYVYNTHVNVPALNSIDLYSRPQNYVQNYTNIRENPQNLVVHRQFENASPYQEDFKKLRQDGGLNNGAKEKCEEPKENLKPTDENKIYYSEYSQNFSEAKNENDSSVQNKITEDISMNIKGQYICYKCNDVFPSKRGLKHHSKSCTDNDQLVEKVGKFSCSQCAYRCQSPAILKIHERTHSGEKPFSCTFCDYKSGQKNNVAKHILVHMKEKPFRCQYCDYRCAQKNNLVVHERTHTGYKPFACPFCEYRTVQKPNLVKHMYLHTDQKPFSCDMCSYRCVQKTNLTKHKQRHLNEKEGDKIDIKNQSKPYRPRQKSVKCPHCPYRCVQKSSMEKHLQFKHGTQEDFENGLNLMKSPEDTESINLSVKKDFECQQKDSVSEHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00785581;
90% Identity: iTF_01362072;
80% Identity: -