Slit009225.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:3209129-3215737[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0027 0.15 12.4 1.6 1 23 244 266 244 266 0.98 2 10 1.7 98 3.6 0.2 3 23 291 312 289 312 0.93 3 10 0.0058 0.33 11.3 0.1 2 23 334 355 333 355 0.94 4 10 0.0014 0.081 13.3 0.9 1 23 359 381 359 381 0.98 5 10 0.0033 0.19 12.1 0.3 1 23 388 411 388 411 0.95 6 10 8.5 4.8e+02 1.4 0.2 3 23 419 440 417 440 0.82 7 10 9.3e-05 0.0052 17.0 1.8 1 23 446 469 446 469 0.96 8 10 0.00011 0.0063 16.8 1.4 1 23 475 497 475 497 0.98 9 10 2.1e-06 0.00012 22.2 1.0 1 23 503 525 503 525 0.99 10 10 9.4e-07 5.3e-05 23.3 3.4 1 23 531 553 531 554 0.96
Sequence Information
- Coding Sequence
- ATGGAGACTCCGGCAGCTCCAGCAAAGGGCAAGGGTCCGATCATAGACCCAGCCTTATGTAGGTGCTGCAGGTCTATAAAGAAATGTCGTCTTTTAACAGTCGAGTATGAATGGATGGGAAGTAAAGAGGTTTATTCAGATATGTTCATGGATTGTTTTGGGCTACTTCTATCAAACCTAGATGGTGAGACCAAGGAGTGTTGTATATGTGCGACCTGTGTGGTGAGGCTGCGTGACGCCTGTGCGTTTAGACAACAAGTGCTGCAGTCTGAGGAAGTCTTCCTGAGTACCAGACTACATTTAAAAGAAGATTGTTCAGACAAGGTGGAAGTAATAATAAAGGCGGAACCACTATGTGAGGACTCCGATGGCTCTGATGGAATGGAGGATCGCGATGAACTCCCAGACCAGGATATGACAGATGCAATAGACACGAAAATGGACATGGATTTGAAGGACGAGTCGGAGGAAGCTCCCGTGTCGTATCGCACGCGCGCCAAGAGGGAGCGGGGAGAGCGGTCCATTAAGAAGGAGATCTCTATTAAAATGAAGAAGTTGCGAGCCAAACTAGACGAGATGTTGGATAAACCTGTTGCAGAAGTTCcagtaaaaaaagaaacaagcaaaaagaaaaaacaagaaTTAGATCATGACTTGATGGTGTATACCAACGCTTTGACAATAGTACATAACTCCTATGTCTGTCCTTTTCAAAATAGAATCAGTATATACTACTGTTTCTACTGCAGGGACCAATTTACTAATCCAAATGAACTCCGAGAACACACCCTCACCCACGACCCAGTCGAACTATTCCAAAACACGATGGAAAACCGAAAAATCCCGAAAATAGACATCACTAGAATCGATTGTCGATTATGCAACGAGAAAATCGATGATTTAGATGTCTTCAAAAAACATCTAACTAGTGTCCACGGCAAAATGCTGTATCCAGTCACGAATGaatttttgaaattcaaattgaGTTTGAATAATTTGATTTGCACAGAATGCAATGGTACGTTTCCGTACtttgacgttttaaaaaaacatatgatTGATCATTTTGGGACGTACATCTGCGATGTTTGCGGCGCTTGCTTTTTGGAGCGGAATTCATTGCGTACACATATAAAATCGCATACGAAGGTCGAAGAGAGTTTCCCATGCGAGATATGCGGGaagaatttaaaaagtaaatacagCAGGTACTTACACGTAGCTACGGTCCATGAAAAGAAACCAACAGTGAATTGTTATAAATGCGAGGCTAGTTTCCTCTCCTACGCTTTAAGGAACAGACATTTGATCGAAGTGCACGGCGACAAAAGAACTTTCGCCTGTAAGCTATGTGACAAAGTCTACAATAGACGAAAGACTCTGATGGAACACAATAGAAGAAATCATTTAAAAGTCTACAAACATCAGTGTGATTTGTGCGATCAAAGGTTCTATCTCCCGTCGCGGTTAAAAGAACATATGGCCACTCATACGGGGGAGAGGAACTTCAGATGTGAGTTCTGTGACAAAAGTTATCCGCGTCTACAGTCGTTGCAGGAACATATTAGGTCTCATAGTAATGATAGGAGATACAAATGCGATATCTGCAACTCGACGTTCACTCAAAATGGTAGTTTGAAAAATCATATGAagtctcatcatcatcagaatTATGATTTGGATGCTAATTATAGCTGA
- Protein Sequence
- METPAAPAKGKGPIIDPALCRCCRSIKKCRLLTVEYEWMGSKEVYSDMFMDCFGLLLSNLDGETKECCICATCVVRLRDACAFRQQVLQSEEVFLSTRLHLKEDCSDKVEVIIKAEPLCEDSDGSDGMEDRDELPDQDMTDAIDTKMDMDLKDESEEAPVSYRTRAKRERGERSIKKEISIKMKKLRAKLDEMLDKPVAEVPVKKETSKKKKQELDHDLMVYTNALTIVHNSYVCPFQNRISIYYCFYCRDQFTNPNELREHTLTHDPVELFQNTMENRKIPKIDITRIDCRLCNEKIDDLDVFKKHLTSVHGKMLYPVTNEFLKFKLSLNNLICTECNGTFPYFDVLKKHMIDHFGTYICDVCGACFLERNSLRTHIKSHTKVEESFPCEICGKNLKSKYSRYLHVATVHEKKPTVNCYKCEASFLSYALRNRHLIEVHGDKRTFACKLCDKVYNRRKTLMEHNRRNHLKVYKHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHIRSHSNDRRYKCDICNSTFTQNGSLKNHMKSHHHQNYDLDANYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285860;
- 90% Identity
- -
- 80% Identity
- -