Slit010599.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- Bcl11a
- Assembly
- GCA_002706865.1
- Location
- NC:3501274-3518775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.096 5.4 7.5 0.3 1 23 222 245 222 245 0.93 2 11 0.0015 0.085 13.2 3.1 1 23 251 273 251 273 0.99 3 11 0.046 2.6 8.5 5.2 1 23 277 300 277 300 0.96 4 11 0.016 0.92 9.9 3.1 1 23 304 327 304 327 0.96 5 11 0.0003 0.017 15.4 2.9 1 23 330 353 330 353 0.97 6 11 1.8 1e+02 3.5 0.5 1 23 356 379 356 379 0.95 7 11 0.24 13 6.3 0.1 3 20 387 404 386 406 0.92 8 11 0.0003 0.017 15.4 0.1 2 23 419 441 418 441 0.94 9 11 6.9e-07 3.9e-05 23.7 0.7 1 23 447 470 447 470 0.98 10 11 0.00016 0.0089 16.3 0.8 3 23 481 501 480 501 0.97 11 11 0.00021 0.012 15.9 0.3 1 23 507 530 507 531 0.94
Sequence Information
- Coding Sequence
- atggaagaaattgaaataaaatatgaatttcctAATGAAGACAATCAATGCTCAGTCTGTCTAAGTATTGGAAGGAAATTGTTTCCATTAGATCAGTGTGTGAACGTGTTTAGGCTACTAACTTCGAAATTAGAAGtttataataaCATTCCTTTAGAAAATATAAGGATATGCTGGGAGTGCCGTGCCTCTCTCTGCAAGGCTGTTAAGTTTCAGCAACAAGCTGTGAAAGCTAATGAAATGTTGCAGTTAGGTCAGAGCTACCTCTACGGCACACAATCCACGCTTGCAACTGTCACTTTGAACGACTCCCATCCACACACAATATACATAAACGATATCAACATACAAACGGATTTAAAGACTTGTGATAAATATAGTgatgttgatgacgatgatggtaGAAGTGTTCATGAGGATAAGGAGTTGGAAACTGTTCCTGATGATGACTTCAAAGAAGAAGAGGTGGCGGAAAATACAGaaCCACAGATAAAACCGAAAAACAACCGCTGGGCGAAGAAAAGagctttacaaaataaaaaaccgaagttcaaaattcttataaaagaCAAGAACTGCTTTAGAAGAGAACAGATAGATGATGTAGATGTTAGAAAATGTATGCAGAGTGAAAGAGATAGcgaatattttaaatctaaaagaTTTAAGTGTGATAATTGTGTTGTTGTGTTTGAAAATGAAGATATTTTGAAGAAACATAGTGAAATGTTTCATGAAAAGGTAACACAATACACCTGTGACATATGTACGTCCCATATAAAATCGAAGAGACAACTCCGTGAACATATAAGACGccattatttgaaatatatgtGTAATATATGCGAATATACATGTTATAGTAAATCTCATAGACTATATCATATAGAAAAACTACATAGACGAATATTTCAATGCTTAAAATGTCGACTGAAGTTTGGGAGTAGAAAAGAATTCTTTAAACATTACAAGGGTTGGCACGAGAAGTTCATATGTGATTACTGCGGCATCACTTTCAAAATGCGGTATTGCATTAAGGACCATATTAGAAAACAGCACTCACCATACGAATGCAAGCCGTGCAATAAGAAGTGGGCTCGGTACAATGGACTATGGCTTCACAATAAGACGACACATACGGCACATAACACAGCCTACTGCGTGGAGTGTGACCGACAGTACAGAGATATATACAGATATCGGTGGCACATAGCtaatagtactagacatacgAAACGTAAGAAACATAGGATTCCATGCCCGGGTTGCGACAAGATATTctcaaaaaatatctacatgaaAGATCACTACAACTTAGTTCATTTGAAGTGTTATAAGTATCGCTGCGAGCAGTGTGATAAGAACTTCATCAGGAATGCAGATTTAGTGAAGCATACAAGACGCGTCCACGAAGGTATATTGCcgcctaaaaataaaatatgctatATGTGCGGCCGTGGGTTTACTACAAACAAGATATTAACGAACCATCTTCGTACCCACACAGGCGAGAAGCCCCACGTGTGTTCTATATGTGACGCGCGGTTTGCACAGAGCACTGCCTTGTCCGCGCATGCGCGAGCCATACACCATACAAGCAAAACTACGTAG
- Protein Sequence
- MEEIEIKYEFPNEDNQCSVCLSIGRKLFPLDQCVNVFRLLTSKLEVYNNIPLENIRICWECRASLCKAVKFQQQAVKANEMLQLGQSYLYGTQSTLATVTLNDSHPHTIYINDINIQTDLKTCDKYSDVDDDDGRSVHEDKELETVPDDDFKEEEVAENTEPQIKPKNNRWAKKRALQNKKPKFKILIKDKNCFRREQIDDVDVRKCMQSERDSEYFKSKRFKCDNCVVVFENEDILKKHSEMFHEKVTQYTCDICTSHIKSKRQLREHIRRHYLKYMCNICEYTCYSKSHRLYHIEKLHRRIFQCLKCRLKFGSRKEFFKHYKGWHEKFICDYCGITFKMRYCIKDHIRKQHSPYECKPCNKKWARYNGLWLHNKTTHTAHNTAYCVECDRQYRDIYRYRWHIANSTRHTKRKKHRIPCPGCDKIFSKNIYMKDHYNLVHLKCYKYRCEQCDKNFIRNADLVKHTRRVHEGILPPKNKICYMCGRGFTTNKILTNHLRTHTGEKPHVCSICDARFAQSTALSAHARAIHHTSKTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -