Slit014360.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NW:30636-45597[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00072 0.04 14.2 0.7 1 23 64 87 64 87 0.98 2 10 0.00075 0.043 14.1 0.9 1 23 94 116 94 116 0.99 3 10 0.00049 0.028 14.7 0.2 2 23 152 174 151 174 0.95 4 10 0.00049 0.028 14.7 1.0 2 23 177 199 176 199 0.95 5 10 1e-05 0.00057 20.0 1.2 1 23 205 227 205 227 0.97 6 10 0.13 7.5 7.1 0.4 2 22 237 257 237 261 0.92 7 10 9.9e-05 0.0056 16.9 1.6 1 23 266 289 266 289 0.94 8 10 0.00032 0.018 15.3 2.0 1 23 295 317 295 318 0.96 9 10 0.00022 0.012 15.8 2.8 1 23 326 348 326 348 0.96 10 10 2.1e-05 0.0012 19.0 1.4 1 23 354 377 354 377 0.95
Sequence Information
- Coding Sequence
- atgaaaccagataaaaaaatgttaagaaaagctaataaaaaatacaaaaatcaatttaaaaagttgATAGCTTTAGAAGATGATGAAAAAGAGTTTAAAAAGAAGTTTATAGAAGTGGTTATGAGCGAAGAGGAGATGATGAGATTGAGGGAGTCGAAGAGGAATCATCATAATTTCAAGAAGATACCATTTAAGTGTGATACTTGTGTTCTAGGTTTCGCAAGAGAAGAAAATTATAGTTTGCATATGCAGAAGAAACATGCAGAGAGTATAGGACCCTACCAATGCGAAGTATGCAGCGTCCGATTTCCAACAAAATTAGCTACGGAAAAACACAGACGTAAGCACTACGTCTGCTATAGATGTCGCTGTTGTCGATATAAGGCGCATGAGCTCTGGTCAGCGCTAAACCATTGTAAGATGAAACATTTGACTGATGAGCCGGACAGAATACATTGTTCACAGTGCGATGTTGTTGTTAAaactccagaagaattagaaaatcACTTACAAAAGGAACATTCTCTTCATTGTAATGAATGTGGAGTCAAGTTCAAAGCGACCAACACTTTGAGGAGACATATAGCACGTATACATTCAGTACTTCGAGACTTCATTTGCGATATATGTTCGAAGACTTTTAAAACGAAGACTCGTCTAGAATCGCATATAGTGAAACATAACGGTAACATAGCGAAGAAGCTGGCTTATTGTAATATATGTAATGTGCAGTATAAGAACATATATGTTTATAGAAATCATTTGAAGTCCAGTGCTAACCATACGGAGAAAGTctatTCTTGTCCGGAATGCAGTAAAAAATTCGCGTCAAAAGTATATTGGACGaatcattataatttttatcatctACGGAAATCGCAATATAAATGTGATAGTTGTGATAAGGTATTCATATCAGATTGGAGATTGAAGAACCACAAGCAAATTCATCATGGACTATCTCGAACCAGGGACCACGCTTGCGATTTATGTACTAAGAAGTTTTATACGTTGGCCACTCTCCGTTCCCATCGGCTGACTCACTCGGAGCACAGGTCGTATATGTGCGAAGATTGTGGACACACGTTCAAACAACGAGCTGCGTTATACACACATAATCGGTTACTTCATCGACAGACTTAG
- Protein Sequence
- MKPDKKMLRKANKKYKNQFKKLIALEDDEKEFKKKFIEVVMSEEEMMRLRESKRNHHNFKKIPFKCDTCVLGFAREENYSLHMQKKHAESIGPYQCEVCSVRFPTKLATEKHRRKHYVCYRCRCCRYKAHELWSALNHCKMKHLTDEPDRIHCSQCDVVVKTPEELENHLQKEHSLHCNECGVKFKATNTLRRHIARIHSVLRDFICDICSKTFKTKTRLESHIVKHNGNIAKKLAYCNICNVQYKNIYVYRNHLKSSANHTEKVYSCPECSKKFASKVYWTNHYNFYHLRKSQYKCDSCDKVFISDWRLKNHKQIHHGLSRTRDHACDLCTKKFYTLATLRSHRLTHSEHRSYMCEDCGHTFKQRAALYTHNRLLHRQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -