Slit011279.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:2347649-2365985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0095 0.53 10.7 5.9 1 23 914 936 914 936 0.98 2 11 0.00014 0.008 16.4 1.1 1 23 942 964 942 964 0.98 3 11 0.00014 0.0078 16.5 1.7 1 23 970 993 970 993 0.96 4 11 0.065 3.7 8.0 3.2 1 21 999 1019 999 1021 0.95 5 11 0.00021 0.012 15.9 2.7 1 23 1027 1049 1027 1049 0.99 6 11 2.8e-05 0.0016 18.6 5.3 1 23 1055 1077 1055 1077 0.98 7 11 0.002 0.11 12.8 0.9 1 23 1085 1108 1085 1108 0.97 8 11 0.042 2.4 8.6 4.5 2 23 1115 1136 1114 1136 0.96 9 11 7.4e-05 0.0042 17.3 2.1 1 23 1142 1164 1142 1164 0.98 10 11 3.7e-05 0.0021 18.2 1.7 1 23 1170 1193 1170 1193 0.93 11 11 3e-05 0.0017 18.5 4.3 1 23 1207 1229 1207 1229 0.97
Sequence Information
- Coding Sequence
- ATGGCCGACGGTGCGCGCGTCCGGCCTGAAGGCCAGATAGAAAATCCAAATAAGATTGGATACGTGCATCTATTTCCATCCTCTGCTCTTAGAGGTAAGAGTGCTACTATACAGGTGCAAAAGGCGAGCCAGGAAAGCCTGGCATGCCCAGGCAGTGTGGCAGGCCAGGTGACACTAAACTACCGAAAGACTAAGTCGTATTTCTTTGGCCCAAAAGGAAAGATTATCACAGAGCCAGACCCGTGGTGCTTTAGACGTCCTAGAACTAAgccaaatatacaaattcatgAAAACATCGTAATAGCACCAGCCCGGGTGGTGGATCAGGAGGCACCGTCCAGTCAGGAGAGACTGGCTAGCCAGAATACCACAAATGAAGGTAATTTCAGGCAAGAAAACTATGAATATTTGATACAGGAGGGCCGCCAGGCAAAGCAATATTTGACGAACCAGGTTAATATAGAACAAAACAATCAGGTTCACCTTGTTAACCAAGATCCTGGGGAACAAGATATTATTGACCTTACCCAGGAGTTTACTGAACGGCGCGATTCCTCGAGTGAAGATAATGTTAACCAGTATCACTGGAAGAGCCTGATACAAAAGCAACTGGTTCGCCAAGATTCTGCGGGCCACCACAATATCACACAAGACAACCAAGAcaattctttacaaaaatatttgtttcgtcACGATTCTAGGAGCCAGAAGAACGTCAGGCGATGTAACCAAGAGACTCCGATTCCAAAGCAACTGGTTCCCAAAGCCCCGTCGCAACAAAATCACGAAGAGCAaggtataaacaaaaaagttgGTTATAGTTTTCCGAATAAATGTAAACTTAGGCAAGATATCCAAGAAAACTTGTCAGAAAACTTTACAAAAGACATCGATCAAGAGGATCTGATTAAGAAGCACTTAATTCGCTACGATTCTGCAAATAAATCTAAGGTAGAACAAGATGCCTCACTAGACCAGTACCAGGTACAGCACGATTCTACAAAGAAGCAAACTAGTGGACATGCGGACTCTGACCTAGTTCATCACAATTCTGCACAAAGAAATAACTATAGAAAAGAGAGCATATCAAGCAAGTCCCCGGTGCAGCACGATTTTATAAAGACAAGTACTGTTGGTCATGAGGATCCGTTAGACGAGTACTTGATTCGTCACAAACCTTCGGCCAAAAATAACATTACCCGGGAAAACGTATCAAAAAAGCACTTGGTGGATCACGACTCCGGTGAAAACATCGACCAAAAGAACTTATCGAACAAGTACGTGGGACTGCACGAATTCGCGAAACACAATAACTTAGGTCATAAGGATTTAATTGATAATTATCTATGTCATCACAAATCTGCTAAAAAATGCAACGACGAACAAGAGGAAACATTTGACAAGTTTTTAGTTCATCACGATTCTGGGGTAAACGAGTTACTGATATCACATAACTGTTCAAGGAAAGACGACAACATCGATCAAGGGCATGTTTTAGACAAGTACGTTGTTCGCCAAGATTCcggtaaaaaaaattactccGGAGAAAAGACCATCATAAACAAGTCTGTGGCACAACACGATTCTATTGTGAAAGAAAGCATTAAACAAGAAGACGAATTAGAATTGTATTTGGCACAACACGATTCTGCAAAGGAAATTGATGATGGTCAGGAGGACTTGTTAGACAAGTATTTAATTCTGCACAACTCCCTGAAATACAGTAACTCTGGACAAGACAAAAATACAAAGCCGAGTACAGTGGTACGAGAAGTAGACCACGATTGTGCAAAGCCATATACCATCGATCAAGAGGACCCCGTCGACAAGTACTTGATCCGCCACGATTCTGTAAACGAACATACTCACCTCAATTCAGTAACTACACCTAACTTAAATTCTGATGAACATAACGTCGAACAAGAAAACCTGATTGACAAATACCTGGTTCGCCAAAATAAACCTAGTGTTGGACAAAACAACGAAAATACTTTAGTTGACAAGTACCTGGCTTGCCACGATTctgtcaataataataaagaacaagAGAGCGTATATAATCAATACCTGGTTCGTCCCGAACCTCCAAAGAAAAGTAACATCACACAAGACAAGCAAGAAAGCGATTGCATGGTTCATCAAGATTCAGCTGATCCCAATAACGTTGAGCAAAGTAACCAAGGGAGCTTGGCGGGAAACGATTCCACAATGCCTCCTCCCGACAAAAAGGATAAGAAGCAAGCTGTGCTTCAAACTTACTTGAATCCAACAACTGCTGCTACAGTCATCGCAGTGAATGCCACAGATGATAAAGGTTTGCCTTCCGGGATGGTAGAATATTTTGTGGACGAAGATGGCAAATACTACTACCAGTCGACAGTTGATGGGCAAGCTTTGGTTATGAACACACCGGCTGTCAACCAGGATGagACTGCTGAAACATCAGATGCAATAATGGCTGACCCTGGAGACACTTTCCAGACTGTCACCTTCGTACCCTCGGAAAACAACGGAGAGGTCAGCTATGTGCTGGTCGTGCAGGAGGAGAAGGCTGTTGTCAACATAGATCTCAAGGTACCAAACCAGACGGAGGAAGAGAAAGGCAACGACGATGTTTACAACTTCGAGGAGGAGGAAGCAGGAGAAGAGGCCTCGGAAGGAGAAGATGAGGAGATGGCAGAGGGTACCAATATTACCCCCAAGCACACACAGAAACGGACCAAAACCCTTAGACCGCACTTCACTTGCAACTTCTGCTCTTATACTAGTCACCGAcgTTACCTTTTACTCCGCCACATGAAATCTCACTCTGAGGACCGTCCTCACAAGTGCAGTGTGTGCGAACGTGGCTTCAAGACGATCGCCTCTCTGCAGAACCATGTCAACATGCACAATGGCATCAAGCCCCATGTCTGCAAGTACTGTAACAGCCCCTTCACTACCTCTGGTGAGCTGGTGAGACACGTACGCTACAAGCACACGCACGAGAAACCGCACAAGTGCTCGGAGTGTGACTACGCGTCCGTTGAGCTGTCGAAGCTACGTCGCCACGTCCGCTGTCACACTGGCGAGAGGCCGTACCAGTGCCCGCATTGCACCTACGCGTCTCCAGATACGTTCAAGCTGAAACGCCATCTTCGCACGCACACCGGGGAGAAACCATACAAGTGTGAGCACTGCAACATGTGCTTCACACAATCCAACTCACTGAAGGCTCACCGACTCATTCATAATGTAGCTGAGAAGCCGATGTACTCGTGTGAACTGTGCCCTGCTAAATGTGGTCGTAAGACAGACCTTAGGATTCACATTCAGAAGCTGCACACTTCAGACAAGCCGCTCAAGTGTCGGCGCTGCGGGAAGACCTTCCCTGATCGATACTCCTGCAAAGTGCACAATAAGACCCATGAGGGTGAGAAGTGCTTCAAGTGTGACATTTGCCCGTACGCTTCCACCACACTGCGTCATTTGAAGTCTCACATGTTGAAGCATACTGATGAGAAGCCATTCTTATGTGACCTCTGCGATCAATCGTTCAGGCAAAAGCAGCTGCTCCGTCGTCATCAGAACCTTTACCACAACCCTAACTATGTGGCGAAGCCTCCTAAAGAGAAGACGCACTCTTGCCACGAGTGCAAGCGTATGTTCGCACACAAGGGCAATTTGATACGCCACCTGGCTGTCCATGACCCAGACTCTGGTCACCACGAGCGCGCCCTCGCCCTCAAGATCGGCAGGCAACGGaaggtcaagtttattgaggaaGAGCCAATGAGGGACATTCGCGTGGTTGATTCCTCGGACGCGGCGGAGATGATGAAGCTGGGCTTGAGTAACAATGAGTTGAAGCGAGGCGAGCTGGTGACGGTGTCTGATGGAGACGGCCAACAGTACGTGGTCCTTGAAGTCATACAGTTGGAGGACGGCACGGAGCAACAAGTCGCTGTCGTTGCTCCAGACTATATCGATGAAGATGAACAAGTAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAAGAATCAACACAGAGGACTTTTACCGTCAAGGACCCTGTGGCTGAACGGAGCATCAAACTCGAAAAAGATGTAGATACCTGTTTTGGATTTGATGAGGAGGATGAGGACGCGGAAGATGAAGATTATACTGATAAAGTAGTTTTGCGTTTAGTTTAG
- Protein Sequence
- MADGARVRPEGQIENPNKIGYVHLFPSSALRGKSATIQVQKASQESLACPGSVAGQVTLNYRKTKSYFFGPKGKIITEPDPWCFRRPRTKPNIQIHENIVIAPARVVDQEAPSSQERLASQNTTNEGNFRQENYEYLIQEGRQAKQYLTNQVNIEQNNQVHLVNQDPGEQDIIDLTQEFTERRDSSSEDNVNQYHWKSLIQKQLVRQDSAGHHNITQDNQDNSLQKYLFRHDSRSQKNVRRCNQETPIPKQLVPKAPSQQNHEEQGINKKVGYSFPNKCKLRQDIQENLSENFTKDIDQEDLIKKHLIRYDSANKSKVEQDASLDQYQVQHDSTKKQTSGHADSDLVHHNSAQRNNYRKESISSKSPVQHDFIKTSTVGHEDPLDEYLIRHKPSAKNNITRENVSKKHLVDHDSGENIDQKNLSNKYVGLHEFAKHNNLGHKDLIDNYLCHHKSAKKCNDEQEETFDKFLVHHDSGVNELLISHNCSRKDDNIDQGHVLDKYVVRQDSGKKNYSGEKTIINKSVAQHDSIVKESIKQEDELELYLAQHDSAKEIDDGQEDLLDKYLILHNSLKYSNSGQDKNTKPSTVVREVDHDCAKPYTIDQEDPVDKYLIRHDSVNEHTHLNSVTTPNLNSDEHNVEQENLIDKYLVRQNKPSVGQNNENTLVDKYLACHDSVNNNKEQESVYNQYLVRPEPPKKSNITQDKQESDCMVHQDSADPNNVEQSNQGSLAGNDSTMPPPDKKDKKQAVLQTYLNPTTAATVIAVNATDDKGLPSGMVEYFVDEDGKYYYQSTVDGQALVMNTPAVNQDETAETSDAIMADPGDTFQTVTFVPSENNGEVSYVLVVQEEKAVVNIDLKVPNQTEEEKGNDDVYNFEEEEAGEEASEGEDEEMAEGTNITPKHTQKRTKTLRPHFTCNFCSYTSHRRYLLLRHMKSHSEDRPHKCSVCERGFKTIASLQNHVNMHNGIKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVAEKPMYSCELCPAKCGRKTDLRIHIQKLHTSDKPLKCRRCGKTFPDRYSCKVHNKTHEGEKCFKCDICPYASTTLRHLKSHMLKHTDEKPFLCDLCDQSFRQKQLLRRHQNLYHNPNYVAKPPKEKTHSCHECKRMFAHKGNLIRHLAVHDPDSGHHERALALKIGRQRKVKFIEEEPMRDIRVVDSSDAAEMMKLGLSNNELKRGELVTVSDGDGQQYVVLEVIQLEDGTEQQVAVVAPDYIDEDEQVEEEEEEEEEEESTQRTFTVKDPVAERSIKLEKDVDTCFGFDEEDEDAEDEDYTDKVVLRLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -