Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NC:12071368-12094002[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0017 0.096 13.0 1.3 1 23 269 291 269 291 0.98

2 15 0.0032 0.18 12.2 1.1 2 23 299 320 298 320 0.93

3 15 0.46 26 5.4 0.3 1 23 324 346 324 346 0.94

4 15 0.00026 0.015 15.6 1.7 1 23 351 374 351 374 0.98

5 15 0.0026 0.15 12.5 0.1 1 23 378 401 378 401 0.94

6 15 0.0099 0.56 10.6 0.1 3 20 418 435 417 441 0.92

7 15 0.0047 0.26 11.6 3.0 3 23 451 472 451 472 0.98

8 15 0.38 21 5.6 0.5 2 23 492 514 492 514 0.97

9 15 3.4e-05 0.0019 18.4 1.3 1 23 525 547 525 547 0.98

10 15 0.0047 0.26 11.6 3.0 3 23 1081 1102 1081 1102 0.98

11 15 0.38 21 5.6 0.5 2 23 1122 1144 1122 1144 0.97

12 15 3.4e-05 0.0019 18.4 1.3 1 23 1155 1177 1155 1177 0.98

13 15 2.2e-06 0.00012 22.1 2.9 1 23 1183 1205 1183 1205 0.98

14 15 5.8e-06 0.00033 20.8 0.9 1 23 1211 1233 1211 1233 0.98

15 15 1.9e-05 0.0011 19.2 0.4 1 23 1239 1262 1239 1262 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0017	0.096	13.0	1.3	1	23	269	291	269	291	0.98
2	15	0.0032	0.18	12.2	1.1	2	23	299	320	298	320	0.93
3	15	0.46	26	5.4	0.3	1	23	324	346	324	346	0.94
4	15	0.00026	0.015	15.6	1.7	1	23	351	374	351	374	0.98
5	15	0.0026	0.15	12.5	0.1	1	23	378	401	378	401	0.94
6	15	0.0099	0.56	10.6	0.1	3	20	418	435	417	441	0.92
7	15	0.0047	0.26	11.6	3.0	3	23	451	472	451	472	0.98
8	15	0.38	21	5.6	0.5	2	23	492	514	492	514	0.97
9	15	3.4e-05	0.0019	18.4	1.3	1	23	525	547	525	547	0.98
10	15	0.0047	0.26	11.6	3.0	3	23	1081	1102	1081	1102	0.98
11	15	0.38	21	5.6	0.5	2	23	1122	1144	1122	1144	0.97
12	15	3.4e-05	0.0019	18.4	1.3	1	23	1155	1177	1155	1177	0.98
13	15	2.2e-06	0.00012	22.1	2.9	1	23	1183	1205	1183	1205	0.98
14	15	5.8e-06	0.00033	20.8	0.9	1	23	1211	1233	1211	1233	0.98
15	15	1.9e-05	0.0011	19.2	0.4	1	23	1239	1262	1239	1262	0.98

Sequence Information

Coding Sequence: atggATTTCTTACAAGTGTGTCGTATTTGTTCAGCTATGGACGTGAAAATGCACGATTTACGGTTGTTTCCTCTGAATTCGTTCTACGACTTTGTAATCGGAACCAATCCTCTTAACTGCAACTTGCCACCCTATGCTTGCTTTGAGTGTGCAGCTCTTGTGAagaaattttacaattttaggcAGAAATGTTTACGGAATCAAGATGTTCTGAATGGGATAACAGATATTTATGGGAAGTTGAACCCAGCTGAAGTCAGAGCAATCAACAGAAAAGAATTTAATATCTCATCAAATCTCATCATCACTCGCCTAGAGAGCATAGATACAACATGCAACAATACCAGCAATGAGTTTGTAAAAATAGAACCGGAAGATTGTGAAGATGATAAAGTTAAAGTAGAGGACCATAACTATGCAAGCATAGACCAGATAGACCATAGTGTCTCGAGTGACGATGATGAACCTCTTTCGATACATAAAGAGAAAAagcttaaaaataaagaatctgATGAGGATATGTTTGAGAATAACTTTGATTGTGACGAATTTGGAGCAGCCCTGGATGAAGGGAATTCAGTAGATGCTTTAGAAGAAAAGAAAGTTAAAAAGCTGAAAAAGAAACATCGTAAAAATGGTAGAAGTGGTGCTTTCAAGCATGTCAAAATGTTGTCAAACCCCAGTTTGTCTGCAGAGAACATGGATGATTTTGATCAGTACATTACTGTTATAACTCTGACAGTGGAAGAGCAGAAAGCAGAAGTAATGAAAAGAAAGGAATCTTCAAACTACTTAAATTCTCCATACCAGTGCAATCTATGCTACAAAGGGTTCATTGATAATAATGCTTGGAATCATCATGTTAGCAAACATTCAGAGGCTGCAGGCAGCTTAGAGTGTGATGTTTGCAAATTTCGGTTCAAAACAAAGCGTGCTTATCAAAAACATGCATCTGGTCATGAAAAGAGATACGCGTGTAAATCCTGCCCTTATGTATCAACCAATACGACACAAGCAAAACAGCATCAAGGATGGCATAAAGGAGTAACATTCAAGTGCAAATATTGCAACGAAATTTTCAATGTATGGACATCGTACATGAGTCACACTCGCATCAAGCACCCGTCGGAGTTCATCTGCGGTATCTGTGGATACTCGTTCATCAGCAAACTAGGACTCGCCATGCACAAGACTATGATGCATAAAGATGTTTTGGAGAAACCAGAAGAGAATGCAGAAGACGGTCCATACTGCGCGGAGTGCGACGTGAAGTTTGTGTCGAGCGTAGCGTACAAACGGCACATGGTCATGTCGGTCAAACACACGCAGAGCACGGACTCTATTAAAGGTTGTCGTACATGCGGCGCGACGTTCGAGAACGCGGAAGGGTTGCGCCACCACCACCGCAAGGAACATACCAGGAAGCGACCCAAGAACTATGGGAAGAAACCCACGACTGGGAACTGGCCCGCTAAGTGTGAACATTGTGAGGAAGAGATCCCCAGCGCCCGTGAGTACTGGACCCACTTCCGTCGTGTCCACCCGGACAAACCATACCCCGTGGAAAAGAACCACGTCTGTGATATATGTGGGAAGAGTTTTCGGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAATGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGTAAAACACAAGTGTGACCCCGCAGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGGCAAGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGCGaattaaatattaacacaaaaattaaatttcatctCAACAGTAAAGGTTGTCGTACATGCGGCGCGACGTTCGAGAACGCGGAAGGGTTGCGCCACCACCACCGCAAGGAACATACCAGGAAGCGACCCAAGAACTATGGGAAGAAACCCACGACTGGGAACTGGCCCGCTAAGTGTGAACATTGTGAGGAAGAGATCCCCAGCGCCCGTGAGTACTGGACCCACTTCCGTCGTGTCCACCCGGACAAACCATACCCCGTGGAAAAGAACCACGTCTGTGATATATGTGGGAAGAGTTTTCGGGGCAACGCGTTCCTAGTGTACCACAAGCGCACGCACTCCGCGGAGCGCGCGTACTCGTGCGGCCAGTGTGGCAAGTCGTTCTACAACCGCAGCAACCTGCACGTGCACGAGAAGACGCACTCCGCCGCGCGGCCCTACCCCTGCACCGTGTGCACGCGGGCCTTCAAGTCCAAGGGGGCACTCAGCAGACATTTTAGGACGCACACAGGTCAAAAGCCCTATGAATGCGAAGTATGTGGTAAAGGGTTCTCACAGTCCAACAGTAGGAAGCTACACGTTAGAACTGTACACCTCAAGCAACCAGCGCCATACATCAGTCGGAGTCGGTTGGAGAGACGCAAGCAGGAACAGAAGGAACCCACCAATGAATTTATAttctaa
Protein Sequence: MDFLQVCRICSAMDVKMHDLRLFPLNSFYDFVIGTNPLNCNLPPYACFECAALVKKFYNFRQKCLRNQDVLNGITDIYGKLNPAEVRAINRKEFNISSNLIITRLESIDTTCNNTSNEFVKIEPEDCEDDKVKVEDHNYASIDQIDHSVSSDDDEPLSIHKEKKLKNKESDEDMFENNFDCDEFGAALDEGNSVDALEEKKVKKLKKKHRKNGRSGAFKHVKMLSNPSLSAENMDDFDQYITVITLTVEEQKAEVMKRKESSNYLNSPYQCNLCYKGFIDNNAWNHHVSKHSEAAGSLECDVCKFRFKTKRAYQKHASGHEKRYACKSCPYVSTNTTQAKQHQGWHKGVTFKCKYCNEIFNVWTSYMSHTRIKHPSEFICGICGYSFISKLGLAMHKTMMHKDVLEKPEENAEDGPYCAECDVKFVSSVAYKRHMVMSVKHTQSTDSIKGCRTCGATFENAEGLRHHHRKEHTRKRPKNYGKKPTTGNWPAKCEHCEEEIPSAREYWTHFRRVHPDKPYPVEKNHVCDICGKSFRGNAFLVYHKRTHSAERAYSCGQCGNVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQVKHKCDPAGQRVPSVPQAHALRGARVLVRPVRQGNAFLVYHKRTHSAERAYSCGQCELNINTKIKFHLNSKGCRTCGATFENAEGLRHHHRKEHTRKRPKNYGKKPTTGNWPAKCEHCEEEIPSAREYWTHFRRVHPDKPYPVEKNHVCDICGKSFRGNAFLVYHKRTHSAERAYSCGQCGKSFYNRSNLHVHEKTHSAARPYPCTVCTRAFKSKGALSRHFRTHTGQKPYECEVCGKGFSQSNSRKLHVRTVHLKQPAPYISRSRLERRKQEQKEPTNEFIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -