Slit013770.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- ZNF212
- Assembly
- GCA_002706865.1
- Location
- NC:7379310-7398757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.42 24 5.5 0.5 6 20 12 26 6 28 0.86 2 14 0.39 22 5.6 0.2 2 20 34 52 33 54 0.93 3 14 0.7 39 4.8 0.4 1 12 200 211 200 220 0.90 4 14 0.47 26 5.4 0.0 1 19 401 419 401 419 0.97 5 14 5.5e-05 0.0031 17.7 0.3 1 23 426 448 426 448 0.98 6 14 0.00035 0.02 15.2 0.9 1 23 461 483 461 483 0.99 7 14 1.9 1.1e+02 3.4 1.6 1 12 508 518 508 529 0.70 8 14 0.00017 0.0094 16.2 0.4 3 23 537 557 535 557 0.96 9 14 0.0011 0.06 13.7 2.3 1 23 573 595 573 595 0.98 10 14 1.2e-06 7e-05 22.9 4.5 1 23 601 623 601 623 0.98 11 14 0.00045 0.026 14.8 5.2 1 23 629 651 629 651 0.97 12 14 7.7e-06 0.00044 20.4 0.4 1 23 657 679 657 679 0.98 13 14 0.00016 0.0092 16.2 1.2 1 23 683 705 683 705 0.98 14 14 9.8e-05 0.0055 16.9 0.0 1 23 713 736 713 736 0.96
Sequence Information
- Coding Sequence
- atgGAAGGCCAGCCGCTGAATTGTCCCCTTTGTTGCAATGCTACATTTAGTTCTAAACAGTCTTTGGTAGAACATTTATCAAATTCTTTGAGTATCATAAGCTGCCCTCTCTGTAACCATAAAAGTCCCTCCCTGCCACACCTTATTGATCATTTGTCTCAAGAAAGCTGCCAGTCCGACAGTaatgtactaaataatataaatgtacaaAGTATAATATTTGAGCACAGCACTGAGGACAATATTGAAAACTCTACAGATATAGGAAACTCTGATATTAAAGTATATGAAAATGAAATCAGCACCAATTCAGATCATCAATTAGATGCAAATGAAGCTAACAAAATGTATGTGGAACTGTTCACGAAACAGATGAAACCATGTTTAGAGACGAGAGAACTGAAGTTAATAAAGGAGAATGGAGAGAACCGTTACATGATCGTAACACAAGATGATGCGGACTTGAGCGCAGGAAACACTATTGTTACTAAAAATACTGACGGCACTATATCTTTGACTACTGTAAaagACATGGAGATGGAGACAGATGCTATGATGGCCACCGACACAATGCCAGATGAAACTCAGGAGGAGATCTACAGCTGCAACACTTGCAAAGTGTCCTTCACCTCTGTCATAGAACATATACAGAACTACCACAATGATCAGGAAGTTGTTGTAGAGTCTGAATATTTGCAGGAACCTATCGATCAAACCGAGAATCATACTGAGAGCACCCCTTTAGATTATGAGCCAATGGACGGCGAAGACCCGTTGGTGACTCCGGATAAACAGACTCCTCGACGCGTCATCACCGACACTGGCGACATAGTCGAAGAGCCGATGCTGTTCAAAACTGATGCCCAAATCGTCACGGATACTCTGGATTTGGGTGCAGATCACGAAACTATCAAGGCGGAGCAGACGGAACAAGTTGGTGTTTTAACAAAACGATACATACAAGTCAACACGATGTCCGGCGGCGTCATCAAAGATATCGGCCAAGTGAATGAGAATGAAGATGACAAAGACTCCACCATCATAGAACATAAGGACATTGTTGTCACAAGGCGCTACATACCAGTCGACAAAGGCGCCTTAAAAGATCCCATACAGACTGATGCGAAAGATAAAATAGGTCAGTTCCACAAGGTGGTTGTCAAAGAAGTTCCAACTGACTGCGGGTTCGCGCTCAAAACGTATCAGTGCTTAGCTTGCGACATTTCCGTCACTAATTTGGATGAATTCAAAATCCATCCATGTAAAATATtaaaatatccGTGTCCCTATTGTCCCGTGGCGTATGAGAACTACAAATCTCTCTGTGCTCATATGAAAGCACATAAAGCTAAAACAGaGCAACATGCCCTGCCTGTGTCATACGAATGTGGAATATGCAACACTGTGTTCCTGACAAACAAGTCCTTGAAACTACACAAACGAATGCACGACCCTATCAAGAGTCGTGCCATAGAGCCTCCAGTAGAGAACACAGACGGTACCAAAGTAAGTAAAGCGACATATCGCTGTACTATCTGCAACAAAATGATCCCCTGCGACTACAAGGCCATACACCAGAACTCGCACAAGACTTCAGAGAAAATGAACTGCGGCATCTGCAATAAGAAGTTCACGTCTTTGGAATATTTAGAAATGCATACCAGTGTACATAATGTGGATAAAACTCCAATAAACAACCAAGATCAGAACCTGCCATACAACTGTTTGTATTGCAACAGAAGGTTCGCCAGGCCACACGAGAAAGTTAAACATGAGAGGATACATACAGGAGAGAAGCCCCACTCGTGTGAGATCTGTGGCAAGTCGTTCCGCGTGTCGTACTGTCTCACTCTACACATGCGCACGCACACCGGCGCCAGGCCCTACGCCTGCCCACACTGCGGGAAGAGGTTCAAGGCGCACAGTGTATACAACCACCACTTACTGACTCACTCTGAAGTCCGTGCTTACAAGTGCCCATTCTGCCCGAAGGCCTTCAAGACCTCCGTCCAACTGGCTGGACATAAGAACTCACACACTAAACCTTTCCAATGCCAGCATTGTAACAGGCCATTCGCATCACTCTACGCGGTACGAGTGCACACCGAAACACATTCGCGACAGAACAACCTGAAGTTCGTATGTGATATGTGTGGAGCGAGCTACGCTCGAGCCTTCGCCCTCAAGGACCATATCAAACAGGCGCACAGCCAGGATCAGGAATCTGAAGCGTCACCGTCACCGTCACGTAGCATACCGGCTGATGAAGATTGGATGATAAAACACAACCCTGATTCGCTCAACAAAGATTTAACACATGaaATAGACCTGGGAATGAGTGGTATGAGTAGCAACGAACTAATAGTTCCTTAA
- Protein Sequence
- MEGQPLNCPLCCNATFSSKQSLVEHLSNSLSIISCPLCNHKSPSLPHLIDHLSQESCQSDSNVLNNINVQSIIFEHSTEDNIENSTDIGNSDIKVYENEISTNSDHQLDANEANKMYVELFTKQMKPCLETRELKLIKENGENRYMIVTQDDADLSAGNTIVTKNTDGTISLTTVKDMEMETDAMMATDTMPDETQEEIYSCNTCKVSFTSVIEHIQNYHNDQEVVVESEYLQEPIDQTENHTESTPLDYEPMDGEDPLVTPDKQTPRRVITDTGDIVEEPMLFKTDAQIVTDTLDLGADHETIKAEQTEQVGVLTKRYIQVNTMSGGVIKDIGQVNENEDDKDSTIIEHKDIVVTRRYIPVDKGALKDPIQTDAKDKIGQFHKVVVKEVPTDCGFALKTYQCLACDISVTNLDEFKIHPCKILKYPCPYCPVAYENYKSLCAHMKAHKAKTEQHALPVSYECGICNTVFLTNKSLKLHKRMHDPIKSRAIEPPVENTDGTKVSKATYRCTICNKMIPCDYKAIHQNSHKTSEKMNCGICNKKFTSLEYLEMHTSVHNVDKTPINNQDQNLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFQCQHCNRPFASLYAVRVHTETHSRQNNLKFVCDMCGASYARAFALKDHIKQAHSQDQESEASPSPSRSIPADEDWMIKHNPDSLNKDLTHEIDLGMSGMSSNELIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361904;
- 90% Identity
- -
- 80% Identity
- -