Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NC:2269648-2278730[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.045 2.6 8.5 0.4 2 23 39 61 38 61 0.96

2 17 0.0081 0.46 10.9 0.4 2 23 293 315 292 315 0.95

3 17 0.049 2.8 8.4 0.1 1 20 323 342 323 344 0.95

4 17 0.0042 0.24 11.8 0.6 2 23 354 375 353 375 0.94

5 17 6.4 3.6e+02 1.8 1.5 1 23 391 414 391 414 0.84

6 17 0.012 0.68 10.4 1.5 1 23 423 446 423 446 0.94

7 17 0.081 4.6 7.8 0.4 3 23 524 545 523 545 0.86

8 17 5.1 2.9e+02 2.1 2.9 1 23 550 573 550 573 0.94

9 17 2.7e-05 0.0015 18.7 1.9 1 23 579 601 579 601 0.96

10 17 0.00017 0.0097 16.2 1.8 1 23 608 630 608 630 0.98

11 17 6.8e-05 0.0038 17.4 2.3 1 23 635 657 635 657 0.96

12 17 0.00024 0.014 15.7 1.3 1 23 663 685 663 685 0.98

13 17 3.8e-07 2.1e-05 24.5 1.9 1 23 691 713 691 713 0.98

14 17 0.0001 0.0059 16.8 1.6 2 23 720 741 720 741 0.98

15 17 0.00061 0.034 14.4 0.8 2 23 749 771 748 771 0.97

16 17 4.2e-05 0.0024 18.1 0.4 1 23 776 798 776 798 0.97

17 17 0.0011 0.065 13.6 1.5 2 23 805 827 804 827 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.045	2.6	8.5	0.4	2	23	39	61	38	61	0.96
2	17	0.0081	0.46	10.9	0.4	2	23	293	315	292	315	0.95
3	17	0.049	2.8	8.4	0.1	1	20	323	342	323	344	0.95
4	17	0.0042	0.24	11.8	0.6	2	23	354	375	353	375	0.94
5	17	6.4	3.6e+02	1.8	1.5	1	23	391	414	391	414	0.84
6	17	0.012	0.68	10.4	1.5	1	23	423	446	423	446	0.94
7	17	0.081	4.6	7.8	0.4	3	23	524	545	523	545	0.86
8	17	5.1	2.9e+02	2.1	2.9	1	23	550	573	550	573	0.94
9	17	2.7e-05	0.0015	18.7	1.9	1	23	579	601	579	601	0.96
10	17	0.00017	0.0097	16.2	1.8	1	23	608	630	608	630	0.98
11	17	6.8e-05	0.0038	17.4	2.3	1	23	635	657	635	657	0.96
12	17	0.00024	0.014	15.7	1.3	1	23	663	685	663	685	0.98
13	17	3.8e-07	2.1e-05	24.5	1.9	1	23	691	713	691	713	0.98
14	17	0.0001	0.0059	16.8	1.6	2	23	720	741	720	741	0.98
15	17	0.00061	0.034	14.4	0.8	2	23	749	771	748	771	0.97
16	17	4.2e-05	0.0024	18.1	0.4	1	23	776	798	776	798	0.97
17	17	0.0011	0.065	13.6	1.5	2	23	805	827	804	827	0.96

Sequence Information

Coding Sequence: ATGGGATATGAACATCCAAGAACATGGTTCCATGGTTCCAAAGGATCTTCTTTTAAATACTTTGTACCTGACAGAGATTCATGGTGGAAACATCAAAAGTTTCACACCCCTTGGCCTTGTTCCCAGTGTGTGCAGAACTTTGAAACAGAAGTAGAAATCCGGCACCACCTGAAGACtgttcacaatctcgtacattGCAGGCTTTGTCACTTTAGGGTCCTGGATGGTGACCCTTACCACACACATTTGTTCCAAAAGCACAATGTCAGTAATGTGGCTAATAAAGATGAGGAAAACCTGTGGGAATTAGAATATGATGGTACCTCCAACTTTCAATGTCTACTCTGCAATAAACCTAACATCACCACTAGAACATTCTTCAACCACTACATGGGATACCACCACTTCACTCTTAAATGCTTCACACATCTCATCTCAGGTAGAGATCCTCCTTTCACTGTATTTGGAGCTGACCTCAGACCAGAATTTGTTGAGGAACAACTAAAGAATCATCCTAGGTATGGTTATGTTGAATCTGACTTCAAGCCTGCTGGCTGCCCTATCGAAGCTGACCCAAGTGCTACCAAAGACCTACTCAAAGTACTCATACCTGAAATAAAGCAAGAAGTGGTGACTGCGGATGAGGCCAAGACTGATGATGGTCTGGAGAAGACAAaagatgatgattatgatgatgtcTATAAGAActacaatggggatgatgacttTGATGTCACTTCCTTGGAACTCATCGCCGTACAAAAATGTTACCATGATTACATAAGTGATATTTTGTCCGATTTCAATGCTAAGGCATTCTTTGAATATTCCGATATTAATTATGAGAAGATTACAACAGAGATTACAATGGATATAGTCTGTACACTGTGTAGTGTGCGGTACAGcacattatctttattttctgCACACATGTTCAAAATGCACTGCATTAAGTCATCACCCATATTTTCGTGTAGAGTGTGTGTTACACCATTTGAAAACCAGACTGACCTGGACAACCATATAACCAACGAGTTGGGAGACTTCGAAGATCTCTGGATATGTCAGTTTTGTGATAAAGAGTTTGACGACAGGGAGTCGACGCGGCGTCACTTGACTGAACATTGGGATGTGGTAGAATATGACAATTGTTTTAGTCCACATTTAGGTTTCAAGTGCAGGTACTGTCCCACACTGTTCTGGCATGAAACAGACAGGGAGACTCATCAGGTCCGTGCACATTACTTTAATCATAAAGAAGATTACTACAAGTGTGAAACCTGCAATGAGTTGTTTAGCGATAAGATATGGTTTGTCCACCACTACATAGAAAGGCACAGCACTCCAGAGAAGACTCCACTGTACCTCCTCAAGTGCTACCTCTGCTGTCTAGTACTGCCGACTATCGAGGAGATGAGAGGTCATTTCAACTGTGAACACCCTGAAGCTAGGAAGGTGTTCTGTTCCTTAGACTCCTGTCAGTACAAGCCTTTGAGTCATAGAAAGTCTTTCAAATTGCATGTGCGGTCCATGCACACGTCCCGCGCGCGGCCGGAGCGCGCGGCGGACTGCAGCGTGTGCGGGCGCGAGTTCAGCAGCTCGCGCGCCTGCGGGGCGCACATGGCGCAGGCGCACGGGCCCGGCAAGTTCAAGTGCAAGCTCTGTCGACAGGTGCTGCATACCATGGACGAGAGAAAACTCCACTATCTAATGACGCATCCAGGGCAACATCCGTTCGAATGCAATGAATGTGGCAAGTCATTCCAGTACAAGTCCTCTCTATACATGCACAAACAGGACCACATACCCAACAAACAGAATTATACCTGTACCTATTGCGGGAAGACGTTTTTGAAACGCGATTCATTTCGCGAACACGTTCAAATACACGAGGGGCCCCGACATGCGTGCTCGTATTGTCCGATGCGTTTCGTGCAGCGCTCGAACATGTTACGACATGAACGGAGACATACTGGAGAGAGACCGTATGCTTGTCCACATTGTCCTCGGAGCTTCGCTGATAAAGGAGCTTGTAATTCTCATGCAAGGACCCATTTGAAAGACACATCATACGCGTGCATGTACTGCGGCAAGACGTTTGTGCAGAAGTCTAAGCTCACATACCATATAAGAAAACATACGGGAGAGAATCTGGAGACATGTCCGGTATGTTCCAAACTGTTCACAAGTGCGTGCTCGTTGCGTGAACACATGAAGATACATGAGCCTAAGAAGGAGCTTATCAAATGTCCTCTCTGTGATCGTAAGTACCAAGACGAGCGTTACATGCTCCGCCACCTGCGCACGAGCCACACGCGCGCGCGCCACCCCTGTCCCATCTGTAACAAGATGCTCACCAGCCCCGCCGGGCTGCGGCACCACGTCATCACGCACAGCAACATGAAGACCATACAGTGTAAAATGTGTCCAAAAGCCTATTCAGTGAAGAGGACGATGATCAAACACTTCCGTCGTCGCCACGGCTTCAAGGGCACTGAACCAAATATAAAGGAGTTCTACACTAGACTGGACCCTCGAGACTGCAATCTTGGTCTCGACGAACCTCTCATGACCAGTATATTTGGACCTCCGAAGAAGAAATTGGATGAAATATTAATGGCAAATTATGTGACTCTAACTAATGTGGCGCAGCAGAGTCTAACTAATATGCCTGAACGTTTTCCTATACAGGCTCCAGAAAGCGAAACTGCAGAAGGTACACCACACGAACATTCGCAACAGTCCATTCGTAAGGATAACGATAACGATGAACACTCACAAGAGAGTGAAAGAGAAGGTAGTTTTGCTCAACCAGACAAAGTCATCATAAAGGTTGAAGCTAAAGAAGATGACGAATTTGAACACGACGCGGACCTTGAACCTACTGATTTCGTTAGCGTCAAAATTGAACCTATGGATGATGATCCATGA
Protein Sequence: MGYEHPRTWFHGSKGSSFKYFVPDRDSWWKHQKFHTPWPCSQCVQNFETEVEIRHHLKTVHNLVHCRLCHFRVLDGDPYHTHLFQKHNVSNVANKDEENLWELEYDGTSNFQCLLCNKPNITTRTFFNHYMGYHHFTLKCFTHLISGRDPPFTVFGADLRPEFVEEQLKNHPRYGYVESDFKPAGCPIEADPSATKDLLKVLIPEIKQEVVTADEAKTDDGLEKTKDDDYDDVYKNYNGDDDFDVTSLELIAVQKCYHDYISDILSDFNAKAFFEYSDINYEKITTEITMDIVCTLCSVRYSTLSLFSAHMFKMHCIKSSPIFSCRVCVTPFENQTDLDNHITNELGDFEDLWICQFCDKEFDDRESTRRHLTEHWDVVEYDNCFSPHLGFKCRYCPTLFWHETDRETHQVRAHYFNHKEDYYKCETCNELFSDKIWFVHHYIERHSTPEKTPLYLLKCYLCCLVLPTIEEMRGHFNCEHPEARKVFCSLDSCQYKPLSHRKSFKLHVRSMHTSRARPERAADCSVCGREFSSSRACGAHMAQAHGPGKFKCKLCRQVLHTMDERKLHYLMTHPGQHPFECNECGKSFQYKSSLYMHKQDHIPNKQNYTCTYCGKTFLKRDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRSFADKGACNSHARTHLKDTSYACMYCGKTFVQKSKLTYHIRKHTGENLETCPVCSKLFTSACSLREHMKIHEPKKELIKCPLCDRKYQDERYMLRHLRTSHTRARHPCPICNKMLTSPAGLRHHVITHSNMKTIQCKMCPKAYSVKRTMIKHFRRRHGFKGTEPNIKEFYTRLDPRDCNLGLDEPLMTSIFGPPKKKLDEILMANYVTLTNVAQQSLTNMPERFPIQAPESETAEGTPHEHSQQSIRKDNDNDEHSQESEREGSFAQPDKVIIKVEAKEDDEFEHDADLEPTDFVSVKIEPMDDDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758517;
90% Identity: iTF_01361916;
80% Identity: -