Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NC:1012138-1016500[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.53 30 5.2 1.6 2 23 217 239 214 239 0.89

2 10 0.00023 0.013 15.8 1.4 1 23 245 267 245 267 0.99

3 10 2.6e-05 0.0015 18.7 4.9 1 23 273 296 273 296 0.97

4 10 0.00061 0.035 14.4 0.0 2 21 303 322 302 323 0.94

5 10 4.2e-06 0.00024 21.2 3.7 2 23 343 364 342 364 0.96

6 10 5.9e-07 3.3e-05 23.9 3.0 1 23 371 393 371 393 0.98

7 10 4.8e-05 0.0027 17.9 0.5 1 23 399 421 399 421 0.97

8 10 5.5e-06 0.00031 20.9 2.1 1 23 427 449 427 449 0.96

9 10 1.4e-05 0.00077 19.6 3.2 1 23 455 477 455 477 0.98

10 10 1e-05 0.00059 20.0 3.9 1 23 483 506 483 506 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.53	30	5.2	1.6	2	23	217	239	214	239	0.89
2	10	0.00023	0.013	15.8	1.4	1	23	245	267	245	267	0.99
3	10	2.6e-05	0.0015	18.7	4.9	1	23	273	296	273	296	0.97
4	10	0.00061	0.035	14.4	0.0	2	21	303	322	302	323	0.94
5	10	4.2e-06	0.00024	21.2	3.7	2	23	343	364	342	364	0.96
6	10	5.9e-07	3.3e-05	23.9	3.0	1	23	371	393	371	393	0.98
7	10	4.8e-05	0.0027	17.9	0.5	1	23	399	421	399	421	0.97
8	10	5.5e-06	0.00031	20.9	2.1	1	23	427	449	427	449	0.96
9	10	1.4e-05	0.00077	19.6	3.2	1	23	455	477	455	477	0.98
10	10	1e-05	0.00059	20.0	3.9	1	23	483	506	483	506	0.98

Sequence Information

Coding Sequence: ATGTGTGACGAAGGGGAAGATTATTGCCGGCTATGCGCAGAGCCAACTACGAAGGAGACGCTTATATCACCAGACGGAGACGTGGGAATAAATTCCAAAATAACCAACAAACTAGAATGGATAAATGTTGATATTTCTACCACAGATACTCTTCCTAGATGCATTTGTTTTTCATGCTTCGACCTTCTAGAACGTACTTGGTCGTTTTTGCACAACGTAAGGTTAGCGCAAGCAAAACTAAACTCAATATTCTTAAAGAAAAGTGACAGCGAAAATTCGGATACCGATGTTAAAATCACGGCAAACGATGATGGGAAACCGATTAATGTTGATTGGGAGGACTTCGAGAACATGAAGACGGAAGTAAAACCGGAAATTGTTAATGATACGTTACAAATTGTTACTGTAGACCCAAATTCGTTGTTAGATCTGAATGCTGTTAAAATTGAGCAAGCTAGCGATGTTGAGGGGGCTCCAGCGTCTGATGGTTTCAATTCCACAGACAGTGATACTCCTCTCTATATGGCGGCTAAGAAAAAaaagctgaaaaagaaaaagaagctAAAAAATGTAGAGTTAGGAATAGATCCGGATGATCCAAAAGGCGCAATCCCATTTCCAGCCATAACTTGGGACGAGTATATGTGCCGCTGTGCTGAATGTGATGCGCAATGCAAGAATATAATGTCCTTACGCTTACATGCGTTACAAATTCACACTCGTTGCTGCATATTCAAATGTTCGGACTGTAGTAAAGTTATTAGCAACTACAAATCTTTTGTAAACCATGTACGCTCACACAAAAAGCTCTTAAGATACTGCTGTGAGTTCTGCAATAAACGTTTTAATACCGCATCTGGCCTTAAAAATCACAGAAACACATTCCATTACAACGCATACAGAATTACCTGTCCGAATTGCGGATCAATGTTTGAAAACGAGGAACAGCTACAAGACCATATGATATTATACACAAAGTCTTACAGACGACGGACTGTGAAGTGTGAAAAGATGGaatatgaattaaaatgtgAACATTGTCAAAAAGAATTCAAGTCACGAAGTAACTTACAGCAGCACAAGCTTGTCCACACAGAGCGCAGTAGAGATTTCTCTTGTCACATCTGCGGCAAAATGTTCTTTACTAAAGGAACTCTGAGTACCCACATGTTGACGCACGAAGACACGAAACCGTTCAAGTGTAAATTCTGTCCGATGGCCTTCAGAGCAAGAGGGAACCTCCAGTCTCACATCAGTCTACACTCCGGTGCTAAACCATTTGTCTGCGAACAGTGCGGTAAAAGTTTCCGTGTCAAAAGACATTTGAAATCTCATTCTATAGTGCATACAGACTTAATGCCGTACGTATGTGAGTattgtaacaaaacatttaGATTTAAAACCCGTTTGAATTTACATTTAAGACAGCATACTGGTGCGAAGCCCTATAAGTGTGTTTATTGTCAGCGGGACTTTACGAATGGGTCTAATTTTAAGAAACATATGAAACGAAGACATAATATTGATACTTCAATGCGCAAACGGTATAATAATGTTGTGGGGAATGAAGCTAGTATGGATGGCAGTGAAGTGGAGACGAATCAAACGTAA
Protein Sequence: MCDEGEDYCRLCAEPTTKETLISPDGDVGINSKITNKLEWINVDISTTDTLPRCICFSCFDLLERTWSFLHNVRLAQAKLNSIFLKKSDSENSDTDVKITANDDGKPINVDWEDFENMKTEVKPEIVNDTLQIVTVDPNSLLDLNAVKIEQASDVEGAPASDGFNSTDSDTPLYMAAKKKKLKKKKKLKNVELGIDPDDPKGAIPFPAITWDEYMCRCAECDAQCKNIMSLRLHALQIHTRCCIFKCSDCSKVISNYKSFVNHVRSHKKLLRYCCEFCNKRFNTASGLKNHRNTFHYNAYRITCPNCGSMFENEEQLQDHMILYTKSYRRRTVKCEKMEYELKCEHCQKEFKSRSNLQQHKLVHTERSRDFSCHICGKMFFTKGTLSTHMLTHEDTKPFKCKFCPMAFRARGNLQSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYVCEYCNKTFRFKTRLNLHLRQHTGAKPYKCVYCQRDFTNGSNFKKHMKRRHNIDTSMRKRYNNVVGNEASMDGSEVETNQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01361900;
90% Identity: iTF_01361900;
80% Identity: -