Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NC:4481292-4484301[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0051 0.29 11.5 1.8 1 23 68 90 68 90 0.96

2 15 0.0075 0.42 11.0 0.0 3 23 119 140 119 140 0.96

3 15 0.00098 0.056 13.8 1.9 1 23 160 183 160 183 0.98

4 15 0.2 11 6.5 3.4 1 23 188 211 188 211 0.93

5 15 0.0052 0.29 11.5 2.9 1 23 216 239 216 239 0.96

6 15 0.00017 0.0094 16.2 0.3 2 23 242 264 242 264 0.97

7 15 0.028 1.6 9.2 1.7 2 21 270 289 269 290 0.93

8 15 0.0022 0.12 12.7 2.2 1 23 344 367 344 367 0.95

9 15 0.35 20 5.7 0.0 2 23 440 463 439 463 0.94

10 15 5.3e-06 0.0003 20.9 0.1 3 23 470 491 469 491 0.94

11 15 0.0016 0.093 13.1 3.7 2 23 496 518 495 518 0.94

12 15 0.00099 0.056 13.8 2.4 1 23 523 546 523 546 0.97

13 15 8.8e-06 0.0005 20.2 5.0 1 23 550 573 550 573 0.97

14 15 0.0001 0.0058 16.9 0.3 2 23 580 601 579 601 0.96

15 15 2.3e-06 0.00013 22.1 0.6 1 23 607 629 607 629 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0051	0.29	11.5	1.8	1	23	68	90	68	90	0.96
2	15	0.0075	0.42	11.0	0.0	3	23	119	140	119	140	0.96
3	15	0.00098	0.056	13.8	1.9	1	23	160	183	160	183	0.98
4	15	0.2	11	6.5	3.4	1	23	188	211	188	211	0.93
5	15	0.0052	0.29	11.5	2.9	1	23	216	239	216	239	0.96
6	15	0.00017	0.0094	16.2	0.3	2	23	242	264	242	264	0.97
7	15	0.028	1.6	9.2	1.7	2	21	270	289	269	290	0.93
8	15	0.0022	0.12	12.7	2.2	1	23	344	367	344	367	0.95
9	15	0.35	20	5.7	0.0	2	23	440	463	439	463	0.94
10	15	5.3e-06	0.0003	20.9	0.1	3	23	470	491	469	491	0.94
11	15	0.0016	0.093	13.1	3.7	2	23	496	518	495	518	0.94
12	15	0.00099	0.056	13.8	2.4	1	23	523	546	523	546	0.97
13	15	8.8e-06	0.0005	20.2	5.0	1	23	550	573	550	573	0.97
14	15	0.0001	0.0058	16.9	0.3	2	23	580	601	579	601	0.96
15	15	2.3e-06	0.00013	22.1	0.6	1	23	607	629	607	629	0.98

Sequence Information

Coding Sequence: ATGGCATGTGCTTGTCGACGCGAACTAACCAAGTGTCCGAAATGGGAGATTGAAATTAACAGCAGATTTATAGAGAAGAAACATTTCTTTTCAGATTGCCTCCCAGGACGGTACGAAGGCTGTACCTCTGAGCGTCGACGTCAAAACTTGAAAATACTCTTCAACCACACAACTATTATGCCATTCAAATGGAGAGGCAAATATCTTTGCTTTTATTGCGGTCAAAACTATACCGAATACCCAGAATTCCGAAAACATACAAAATCTCACGGCCTTTGTACCACAAAAGATTATTCCCTCAAAATTATCAAAGGGAACCATGTGGAAATTAAGATTGACGTCTCAGAAATTGGTTGCGAAATATGCAATGAACCCTTCAATCGACTTGATGAAGTAATCGATCATTTGATCGTTAAACATGACTTTGAATACAACAAAAAGATCGATATACCGTTCCAAGAGTATCGATTAGTCGATTTTCGGTGCTTACATTGTGAAGAACAATTCTCTTACTTCGGATACTTGGTTAAACACGTGAATACAGTTCATCCACAAAATTGCTTTATCTGTGATCATTGTAGAGCCACCTTCAACAAAAAGAGGGATTTAGATTTTCATCTTAGAAATTATCATCGGCAAGGAGGTTACCCATGCGATTTATGTCTGAAAAACTTTGAAAATTGCATCCAATTGAGAAAACATAAGAACAACACCCATTTTAGACAATGCAAGAGCTGCGGATCCTCttttgggtccctttctctctTACAAAAACATATACAGGTCGATCATTCCCAAAATAACCTAAAATGCTCGTATTGCTCCAAAGAATTTCACACTACTCTAGGATTGAAACAACATTTGAGCAAGTGCAAGGTCAAAATATTGTCCAAAGTTGAGCCACAAGTGTCCTTAAACGAAACACAGCAAGCAGAACCAACTAAGAAGCAAAATGTTCTACAAATCAGACAGAACATACAGTGTGTCCTAAACATGTCGACAGCGGTGCCTTTCAAATTCTTCGCAAAATATTTCTGCTTCTATTGTTCGAAAAAGTTCGTCGAATTTGACGATTTGAAGACTCATACGAATTTAGAACATCCCGTTTGCGATTTAAAGTCTAAAAGTATGAAAAATTTCAAAGGTGAACGGACTACGGTCAAGGTTGACATATCGGCTTTAGCTTGCAAGCTGTGTTGTGTATCAATACCCAATTTGGATGATCTGATAACCCATTTAATAGCAGAACATAAAGCGAATTACGACACTACTATAAAAGGGTGTTTAGAACCCTTCAGGGTCATAAAGGACAATATGCCTTGTCCAATATGTCCAGATACAGTATTCCGATACTTCGGCATCCTACTAAGACATATGAACTCAGAACATAGCAATAATAATCGGATATGCGATTTCTGCGGCCGAAGTTTTCGAAACGCCGCGAACTTGAAGGTCCATATAACGTATGCGCACACAGGATCGTGCGAATGTGATATTTGCGGGATTAAATACAAAAACCAATGGTGTTTGAGTCGCCATAGGGCTAAGACTCACGACGCGAAGGACTACAAATGTCCAAAATGTCCGGAACAGTTTCAATCTGAGtaccacaaacaaaaacatttgatcAAAGTCCATAATGTGGGTCATAAATGCAGTTATTGTGGGAAGATGTTTACTAGGAATTCTTTTATGAAGGATCACGTAAGACGGACgcatttgaaagaaaaaaatattccatgtTCCATATGTAATGAGAAGTTCTTTGATAATTATCTGTTGAGGATGCATATGGTCAAACATGAAGGCGAAAGAAAGTTTAGTTGTACAGTTTGCGGTAAAGCCTTTTTAAGGAAAAGTAATTTGAGCTCCCATATGGAGATGCACAAGAAGTATGGTCATATACCGTTGCAGATATAG
Protein Sequence: MACACRRELTKCPKWEIEINSRFIEKKHFFSDCLPGRYEGCTSERRRQNLKILFNHTTIMPFKWRGKYLCFYCGQNYTEYPEFRKHTKSHGLCTTKDYSLKIIKGNHVEIKIDVSEIGCEICNEPFNRLDEVIDHLIVKHDFEYNKKIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNTVHPQNCFICDHCRATFNKKRDLDFHLRNYHRQGGYPCDLCLKNFENCIQLRKHKNNTHFRQCKSCGSSFGSLSLLQKHIQVDHSQNNLKCSYCSKEFHTTLGLKQHLSKCKVKILSKVEPQVSLNETQQAEPTKKQNVLQIRQNIQCVLNMSTAVPFKFFAKYFCFYCSKKFVEFDDLKTHTNLEHPVCDLKSKSMKNFKGERTTVKVDISALACKLCCVSIPNLDDLITHLIAEHKANYDTTIKGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLKVHITYAHTGSCECDICGIKYKNQWCLSRHRAKTHDAKDYKCPKCPEQFQSEYHKQKHLIKVHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGERKFSCTVCGKAFLRKSNLSSHMEMHKKYGHIPLQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01533270;
90% Identity: -
80% Identity: -