Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NW:355156-403265[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0051 0.29 11.5 5.8 1 23 23 45 23 45 0.96

2 16 0.00049 0.028 14.7 6.3 1 23 51 74 51 74 0.98

3 16 0.00081 0.046 14.0 9.9 1 23 80 102 80 102 0.98

4 16 3.1e-05 0.0017 18.5 1.1 1 23 108 130 108 130 0.97

5 16 0.00086 0.049 13.9 4.7 1 23 136 158 136 158 0.98

6 16 0.0012 0.067 13.5 0.8 1 22 165 186 165 188 0.87

7 16 2.9e-06 0.00017 21.7 1.8 1 23 196 219 196 219 0.97

8 16 0.14 7.8 7.0 0.1 3 23 227 246 225 246 0.96

9 16 1.6e-05 0.00093 19.4 1.7 1 23 252 276 252 276 0.98

10 16 7.3e-06 0.00041 20.5 1.3 1 23 282 304 282 304 0.98

11 16 2.6e-05 0.0015 18.7 3.8 2 23 311 333 310 333 0.97

12 16 0.042 2.4 8.7 0.0 1 23 340 363 340 363 0.94

13 16 0.00034 0.019 15.2 3.6 2 23 370 391 369 392 0.95

14 16 0.41 23 5.5 8.0 1 19 694 712 694 716 0.93

15 16 1 58 4.3 0.6 2 23 727 747 726 747 0.86

16 16 0.043 2.5 8.6 0.3 1 23 875 897 875 897 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0051	0.29	11.5	5.8	1	23	23	45	23	45	0.96
2	16	0.00049	0.028	14.7	6.3	1	23	51	74	51	74	0.98
3	16	0.00081	0.046	14.0	9.9	1	23	80	102	80	102	0.98
4	16	3.1e-05	0.0017	18.5	1.1	1	23	108	130	108	130	0.97
5	16	0.00086	0.049	13.9	4.7	1	23	136	158	136	158	0.98
6	16	0.0012	0.067	13.5	0.8	1	22	165	186	165	188	0.87
7	16	2.9e-06	0.00017	21.7	1.8	1	23	196	219	196	219	0.97
8	16	0.14	7.8	7.0	0.1	3	23	227	246	225	246	0.96
9	16	1.6e-05	0.00093	19.4	1.7	1	23	252	276	252	276	0.98
10	16	7.3e-06	0.00041	20.5	1.3	1	23	282	304	282	304	0.98
11	16	2.6e-05	0.0015	18.7	3.8	2	23	311	333	310	333	0.97
12	16	0.042	2.4	8.7	0.0	1	23	340	363	340	363	0.94
13	16	0.00034	0.019	15.2	3.6	2	23	370	391	369	392	0.95
14	16	0.41	23	5.5	8.0	1	19	694	712	694	716	0.93
15	16	1	58	4.3	0.6	2	23	727	747	726	747	0.86
16	16	0.043	2.5	8.6	0.3	1	23	875	897	875	897	0.98

Sequence Information

Coding Sequence: ATGAGGGAGACTAGGAAGAAACCCAGTGCACCTGCTACACCTAAGATAAAACCCAAACAAACTGAGTTTTCTTGTCCAGAATGTAAGAAGaAATTCACGGACTCATCAGGCCTGCACTGTCACAGAaaattacacacaaacaaaatgcCATTCAAATGTGAGCTCTGTGACTATAAGTGTAAGGTCAAGAAATACTTGACTCGTCATATGAAGAAGACGCACACTGAACCGACCGAACACCAATGCGATATTTGCGGGAAATGTTTCCATTTTTCTTGTAAATTGAGAGACCATATGAGGGTGCATACTGGTGAGAAACCACATAAATGCGACGTGTGCGGCAAAGCGTTCAGTTCAACGTATTCGTTGAATGGACACAAATTGATACATACCGgAGAGAAACCCTACCAATGCACGCATTGTGACTACGCCTGTAGAGACACATCCACTATAAGGAGACACATAGAGCGCCATCTAGGAATATCTAAGGACTTTCCGTGCTCTTTATGTAATAAGATCTTTAAGAGAAAGGATACTCTGCAATTCCACCTAGATGAAGTACACTTCGAGTTGGACCCCAGGAAGTATCCTTGCGAGCACTGCGATAAAGTgttcaaaactaaaaatacgTTGAATGTGCataataaTACAGTACATAAGAAATCCAATCGAGTCAACTGTGAGATATGCGGAGTGGAAGTCACCAAAAACAATGTTCTGGCTCATCTAAGGCGTCATGTCAATCTGCGAccttataaatgtaattacgaTAATTGTAGACGACGATTCAAGGATAAGGGTGATCTCAAAAAGCATATACTAATACACTATCCAGATCGTCAATATAGCTGTACGTACTGCAACCGAAAGTTCCCGAGAAAGTCACGACTAAACGAACATATAGCCATGCATCTAAGGGGATACAAAGTGCAGTGTGATTATTGCCAtgaaatGTTCTCATCAAAGATGCATCTATCAAAGCATATAAAAAGAGCTCACAGTCCTAACTCGAAGAAATATATTTGTGACATCTGTGGTATTGTCATAAGCAGTCGTCGCGGCATTGTCAGACATCTACTATATGGCCATGGGACTGAAaaaGACGTACAATGCCAACTATGTAAGAAGGTATTCAGTCACAATGTGGGGTTGAAGGACCATTATTTAAAGCATCATAATATCAAGTACTGCTTGCTAGAAGACAAgcAGCATGAAATGACAATAAAAGATGAACCGATAGAAGAATACTTGAGCGATGACACTCGCCGGTACTCATTCGAAGTTGACATTGACAAACATGAAATTGACGAATTATTTCAACCTCAAGAAGGTCAGATATCAGAAGAGATAGACATAGAGATACCACAAGACCAGATAGATATAGAACCAGACCCGACCACACAAGAGGTGTCAGAAGTTGTGCCTACAAATATAGATAAAGAACAGAGTTCAGAAGATATTGTTGAAGAAGTCTTCTTAGGAAATGTGGTTCAGAACACTGTTAGGAACATTGATATACCAAATAACATAGTAGATATGAAACAAAAAGAGACAGTGAACAAATGCGTCGAGGAGATGCTGAGCAAAGTGCGCAAGCGCAAGGAATATAAAGTTTTAGAGATACTGCGCCAACAATATAACAAACGAATTATAATGGCTACTAGGAGCGGTAAAAAACAAGATAAATCGCTGATAAAATTCTTCAAAAAGTCATCGGAGAATTCAGAAAAAGATACCAACATTAATTCTAGCGATAAAATcaataatcaaaacaataacgATAGTGAAACTGGTATAGATAACGCAAATAATGATAATGGAAATAACGAAAATACTCATAACGACGATAATTCTAATGAAACTGCTGCAGATAATGGAAATAACGGAAATATTCATAATGGAAATGTAACAACGATTGATAACTATAATGAAAATAACGGAGATAATCGTAATGATAATAGAAGTCACGGTGATTGTATTAATTATCAGGAATCTGATgattctgatgatgatgacgatgaagatTATGAGTATAAAAATGATGTAAAGGATAAAAATGGGAAATTGAAACTTAATACACATcaatgttatatttgttttaagCTCTTCAAAACGAAAACAGACCTACAACATCACTGCACGGAACATTTCGATATATGCAACgagaaaactataaaaaaatgtccgtTTTGTGGCTACGTCACGAATTTGAAACTCTCTAGACACATCAGACTAGtacataaagttaaaattaggATCCCTTACTTCCCATCTTGCATCAAAGAAAGGTCTACTGAAAACGGCTCGAAATACGTCTTTCAGATTGACGAAGGTTGCGATCTAGAAATCATACCCAGTATAAGCAATTTAAATAAACTGGCCTCATTGAAAATCGACGAGAAAAATCGTAAAACCAAAAATCAACTCCTCGCTACAACGAAATTGGTCAAAAAGGGCGAAAATTGGATGGTCAAAAAGGAGGCTGTGGAAGTAaatcatgattatttattaccgaatttttttaaagaggaaTATCAAAGCTTAAAGTCCATTGGAGATACTTATATTGAACGGTTACGGGGTCTAAGTATTATAGCAAAACAACGCAAGCTAAGAATGCTGTACCCCTGCGACGGTTGTGAAAAAATTTGTCTATCAATCGCAGccttaaaattacatttaagaaAACACGAAGAAAATCCCAAAAAATACAAACCAAAGATATGGAAAAATCGCATCGTGAAAGCTAGTAAAAAAATGGCGCGCGGTAAAAATTTGAATGACGCAAGTGAAAGTTCGAATGACGCGGGTAAAAGATTGAATGACGCAACTATAAGTTCTACCAATCGTTTCGCTGATCCGAACCCGGTGACTCGTAAGCACAAATGCGACAAAGCGTTAATAGATTTTTACAAAACCAACATTAAAGGCGGCGATATAGAATTTTGGCAATTTCTGAAAATTTTCAACAAGATGGACAGGGAAAACGTCAAAGACTTCAAAGATTTGGAGAATAGATTCGATTTTGGTATGCATAACATGATAGTTAACgataaaaataacgaaaatgatcccaaaaataatgaaaatgttcCCGAAAATAGTGAAATTGTTCCCAAAAGTGtagataataagaataatagtaaaaaagttaagaaaaataacataaagaaaGGGTTCACTAGAGCAATAATGATAAGTAAAAGAGAATATATGAAACGAATggagattaaaaaaagaatgagAGAAAGATTGCAagcttctaaataa
Protein Sequence: MRETRKKPSAPATPKIKPKQTEFSCPECKKKFTDSSGLHCHRKLHTNKMPFKCELCDYKCKVKKYLTRHMKKTHTEPTEHQCDICGKCFHFSCKLRDHMRVHTGEKPHKCDVCGKAFSSTYSLNGHKLIHTGEKPYQCTHCDYACRDTSTIRRHIERHLGISKDFPCSLCNKIFKRKDTLQFHLDEVHFELDPRKYPCEHCDKVFKTKNTLNVHNNTVHKKSNRVNCEICGVEVTKNNVLAHLRRHVNLRPYKCNYDNCRRRFKDKGDLKKHILIHYPDRQYSCTYCNRKFPRKSRLNEHIAMHLRGYKVQCDYCHEMFSSKMHLSKHIKRAHSPNSKKYICDICGIVISSRRGIVRHLLYGHGTEKDVQCQLCKKVFSHNVGLKDHYLKHHNIKYCLLEDKQHEMTIKDEPIEEYLSDDTRRYSFEVDIDKHEIDELFQPQEGQISEEIDIEIPQDQIDIEPDPTTQEVSEVVPTNIDKEQSSEDIVEEVFLGNVVQNTVRNIDIPNNIVDMKQKETVNKCVEEMLSKVRKRKEYKVLEILRQQYNKRIIMATRSGKKQDKSLIKFFKKSSENSEKDTNINSSDKINNQNNNDSETGIDNANNDNGNNENTHNDDNSNETAADNGNNGNIHNGNVTTIDNYNENNGDNRNDNRSHGDCINYQESDDSDDDDDEDYEYKNDVKDKNGKLKLNTHQCYICFKLFKTKTDLQHHCTEHFDICNEKTIKKCPFCGYVTNLKLSRHIRLVHKVKIRIPYFPSCIKERSTENGSKYVFQIDEGCDLEIIPSISNLNKLASLKIDEKNRKTKNQLLATTKLVKKGENWMVKKEAVEVNHDYLLPNFFKEEYQSLKSIGDTYIERLRGLSIIAKQRKLRMLYPCDGCEKICLSIAALKLHLRKHEENPKKYKPKIWKNRIVKASKKMARGKNLNDASESSNDAGKRLNDATISSTNRFADPNPVTRKHKCDKALIDFYKTNIKGGDIEFWQFLKIFNKMDRENVKDFKDLENRFDFGMHNMIVNDKNNENDPKNNENVPENSEIVPKSVDNKNNSKKVKKNNIKKGFTRAIMISKREYMKRMEIKKRMRERLQASK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -