Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NC:11770290-11780132[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.6 2e+02 2.6 0.7 2 23 266 287 265 287 0.82

2 13 0.00063 0.035 14.4 1.1 1 20 292 311 292 316 0.92

3 13 0.00025 0.014 15.6 2.8 2 23 444 466 443 466 0.94

4 13 0.0024 0.13 12.6 0.0 1 23 472 494 472 494 0.95

5 13 0.019 1.1 9.7 0.1 1 23 505 528 505 528 0.89

6 13 1.2e-06 6.7e-05 23.0 6.1 1 23 533 555 533 555 0.98

7 13 0.0015 0.087 13.2 3.3 1 23 561 583 561 583 0.95

8 13 4.2e-05 0.0024 18.1 3.8 1 23 589 611 589 611 0.98

9 13 1.2e-07 6.9e-06 26.1 0.3 1 23 622 644 622 644 0.97

10 13 5e-06 0.00029 21.0 3.2 1 23 650 672 650 672 0.99

11 13 4.1e-05 0.0023 18.1 0.2 1 22 678 699 678 699 0.95

12 13 0.00053 0.03 14.6 3.4 1 23 709 731 709 731 0.97

13 13 2.7e-05 0.0015 18.7 5.3 1 23 737 760 737 760 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.6	2e+02	2.6	0.7	2	23	266	287	265	287	0.82
2	13	0.00063	0.035	14.4	1.1	1	20	292	311	292	316	0.92
3	13	0.00025	0.014	15.6	2.8	2	23	444	466	443	466	0.94
4	13	0.0024	0.13	12.6	0.0	1	23	472	494	472	494	0.95
5	13	0.019	1.1	9.7	0.1	1	23	505	528	505	528	0.89
6	13	1.2e-06	6.7e-05	23.0	6.1	1	23	533	555	533	555	0.98
7	13	0.0015	0.087	13.2	3.3	1	23	561	583	561	583	0.95
8	13	4.2e-05	0.0024	18.1	3.8	1	23	589	611	589	611	0.98
9	13	1.2e-07	6.9e-06	26.1	0.3	1	23	622	644	622	644	0.97
10	13	5e-06	0.00029	21.0	3.2	1	23	650	672	650	672	0.99
11	13	4.1e-05	0.0023	18.1	0.2	1	22	678	699	678	699	0.95
12	13	0.00053	0.03	14.6	3.4	1	23	709	731	709	731	0.97
13	13	2.7e-05	0.0015	18.7	5.3	1	23	737	760	737	760	0.95

Sequence Information

Coding Sequence: ATGGAAGTATTTCTCTACAATTCCAATGTTTGTCGATTATGTGGAGAAGAAAATGATAATGGGACGCTATTATATTCCAATgaagaaaataatcaaaacttaTTTAAAGTCATTAATACGTATTTGCCAATCAAGGTATCTGATGATGGGCAACTACCACGTACTATATGTCCAGGATGCACCATACAGCTAGAGGCCACTGTAGAGTTCCTAAATCTTATTATAAATGGACaaAAAGTTATTAGAGAGCTCCACAGTAGAGAGAAAGAATACAAAAGAAGTTTATTACTTCCTCCAAATGAACAGGATATTATAACAGATAAGATTATTTATGAAGTAAATACCAGTGATGGTGTGTATCACGTAGAACACCCAATAGCCTTACAAGTCGCTGGACTTGATAAACCTAAACGAAAACGAGGTAGACCTCCAAAAAGGCCTAAAACCGCTGAAGAATTAGCAAGAGAAGCAGCTGCAAAGGAACATGAGGCTAAAAATGCAAAGAGAACTGAGAAAGAAGATGAACCATTTGGTAAAAGACGAAGGAAAACTCCTACAAGGTTCAAGGAGGCTGTTCAGGGTAAAGAACTGGAGAGGATTTTCAAAGAAGAAGGAGTCACTGATGGGGAGGAAAGTGAAATGGAGAACCTCAAGGCCCAGCTTATAGATAAGAAGCCGCCAGGACCAAGGGAATCAGAAGTCATTGGTCATTTGGAGGAATCCGGAGAGCTTGTTGTAGTAGTCAAAGGCAAGGGACGTGGAAGACCTAAAGGACCAATGATCCCAACACGAAAAGAATGCGCCATTTGTGGTATGGAGTTCACATGTACTGGTCGGTACATGTCTCACATAGCCCAGCACGGACCAGTCCTGTACCAATGCGAGCAGTGTTCTGAGACATTCACCACAAGGCTACATTTCAACATCCATCAGGATGAAGTCGGACACACCGGCCATAATATTATACCTTGTAAGAAAAACCCAGAAAGAAGTAGGAATAAGAAGAATGTAAAAGCTCAATTGGAAACAGTGTCAATAGAAGTGGATCCCCTTTCAATTCCTAATACAACGCCAGTACAAACGATAGATAATATGATAATACCAGTAGCTAATTCCTTGCCGGATCTAAATCCGCAGCTTATTGTAGCAGACAATGAAGTTAGTGCCAGTGACTCCCAGAGGACTGAAAGCCCTAACATTGAAATAGTATCTAGTCCTATTGCTAATAGTGATGTAAAAGTAGTTGATTCAGGTACAGATGTAACTGTGACAGAAAAGTCTGATGAAGTAGACCAAGTAGTAACAACTCCTTCCGGTAAACCAAGACTGAAGTGTCCGCATTGTGATAAAACATTTAGTAGTAAACAAAGCAAGTCTTTACATATTaagGCGACCCACAAGGGCGAGCGTCCGTACGTGTGTGGCGAGTGCGGCGCGCGGTTTGCGTACCCGCGCTCGCTGGCGCTGCACGCCGTCAGCCACCGCAGGCACAGGGCCACTCCTGCTAAGGGATACGCCTGCGACCTCTGCGGGAAGGTGCTGAACCACCCGTCGTCCGTGGTGTACCACAAGGAGGCGGAGCACGCGGGGCAGCGCTACGTCTGCAACAAGTGCGGCAAGTGCTTCAAACACAAACAACTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGGACCGGCCCTACCACTGCAAGTTATGCAACTCAACATTCAAGACTAAGGCGAACTTACTGAACCACTCCCTTCTACACAGTGGCGTCAAGAAGTTCTCCTGCGAAATATGCAAGCACAAGTTTGCACATAAGGCTAGCCTCACGCTGCATATGAGGTGGCATACTGATAGTCACATTGCAGGTCAGAAGCCGTTCGCGTGTAACATCTGCGGCAAGAGTTTCAGTCAGAAGGGCAACCTGTCGGAACATGAACGTATCCACACTGGAGAGAAACCGTTCCAGTGCACGCAGTGTCCACGCAAGTTTACCACGTCCAGTCAGTACCGACTGCATGTACGGAGGCATAACTCTGAGAAGCCATTCGTTTGCACACATTGCGGTAAAAGATTTGTATCGCGCGGTTCCTGGGCGGCGCACGTGCGGCGcgaggcgggcggcgcgggcgcgcggCTCCACCGCTGCGGGGAGTGCGGCCGCTCGTTCGCCGAGCGCTGGGCGCTGCACAAGCACGCGCGGCACCACACGGGCGAGCGCCCGCACCGCTGTCCGCACTGTCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAAGCAAGTGCACAAGCAGATCAGTCTACTGGCGACCGCGAACCAACACCAGCTTCCTTCCCCTGTAACTCTGAAGGTGGAGTTACCAGACTCTCCGCCAATGCAACTAGAGACTGAACACACTGTGCCACTCCCTGGCGCTGCCCCCGTCAAAATGTTAGAAGAAACCGCAGAGGACGAGCTGGAGGAACGAGTTATTTATGTTACGTACGACGTCGAGGGCGGTAACTCACCCGCGTTCCATATACTCGACCCAGAACAaGCAGCATCTCTAGAAGATAGTAAAGTGTTAACAACGTGCGAGCTATACCCCGGTCCGTCGCTGCTGGTCCCGCAGCCTGAGTACGAGGAACTGGAGCTCGAGCACGAGCAACTAGAGCTGGAACCCGAGCAGGAGGAACTCGAGCAACTGCCTGAGGAACTTGTGATGGATGGACATGAACATAATATACCTGTAACAGATGAGCAGGGCAACCCACTCCACTTCACCATGCAGGACGGTACGCGACTGGCGATTACGTCAGCCGATGGGAAATCGTTGCAGGTGATAACTCAAGATGGACAGACCATACCAGTTGAAATAAATGGATTTGCTGATGAAGAGgAGGTGGATAATCCAGACACGATAGTTCATCAGCTGAACCTTCAGAAAAGCATCGATTCCAACGTCTCGTCGCCGGTCACACATTACTTTACAATCGTTTAA
Protein Sequence: MEVFLYNSNVCRLCGEENDNGTLLYSNEENNQNLFKVINTYLPIKVSDDGQLPRTICPGCTIQLEATVEFLNLIINGQKVIRELHSREKEYKRSLLLPPNEQDIITDKIIYEVNTSDGVYHVEHPIALQVAGLDKPKRKRGRPPKRPKTAEELAREAAAKEHEAKNAKRTEKEDEPFGKRRRKTPTRFKEAVQGKELERIFKEEGVTDGEESEMENLKAQLIDKKPPGPRESEVIGHLEESGELVVVVKGKGRGRPKGPMIPTRKECAICGMEFTCTGRYMSHIAQHGPVLYQCEQCSETFTTRLHFNIHQDEVGHTGHNIIPCKKNPERSRNKKNVKAQLETVSIEVDPLSIPNTTPVQTIDNMIIPVANSLPDLNPQLIVADNEVSASDSQRTESPNIEIVSSPIANSDVKVVDSGTDVTVTEKSDEVDQVVTTPSGKPRLKCPHCDKTFSSKQSKSLHIKATHKGERPYVCGECGARFAYPRSLALHAVSHRRHRATPAKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKCFKHKQLLQRHQLVHSQDRPYHCKLCNSTFKTKANLLNHSLLHSGVKKFSCEICKHKFAHKASLTLHMRWHTDSHIAGQKPFACNICGKSFSQKGNLSEHERIHTGEKPFQCTQCPRKFTTSSQYRLHVRRHNSEKPFVCTHCGKRFVSRGSWAAHVRREAGGAGARLHRCGECGRSFAERWALHKHARHHTGERPHRCPHCPRAFADCSNLNKHKKQVHKQISLLATANQHQLPSPVTLKVELPDSPPMQLETEHTVPLPGAAPVKMLEETAEDELEERVIYVTYDVEGGNSPAFHILDPEQAASLEDSKVLTTCELYPGPSLLVPQPEYEELELEHEQLELEPEQEELEQLPEELVMDGHEHNIPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITQDGQTIPVEINGFADEEEVDNPDTIVHQLNLQKSIDSNVSSPVTHYFTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746034;
90% Identity: iTF_01361896;
80% Identity: -