Slit011645.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:1640158-1645603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 1.1e+02 3.4 0.7 5 21 216 232 213 233 0.90 2 13 0.0094 0.53 10.7 0.3 3 23 256 276 254 276 0.97 3 13 0.00031 0.017 15.4 1.6 1 23 287 309 287 309 0.97 4 13 1.6e-05 0.0009 19.4 4.3 1 23 320 342 320 342 0.99 5 13 0.00024 0.013 15.7 3.1 1 23 350 373 350 373 0.97 6 13 0.036 2 8.8 0.1 2 23 380 401 379 401 0.95 7 13 0.013 0.74 10.2 5.2 1 23 407 429 407 429 0.98 8 13 2.6e-07 1.5e-05 25.0 1.2 1 23 435 457 435 457 0.96 9 13 2.1e-05 0.0012 19.0 0.8 1 23 463 485 463 485 0.98 10 13 8.5e-07 4.8e-05 23.4 0.2 1 23 491 513 491 513 0.98 11 13 1.8e-05 0.001 19.2 0.4 1 23 519 541 519 541 0.99 12 13 3.4e-05 0.0019 18.4 2.2 1 21 547 567 547 569 0.96 13 13 7.6e-06 0.00043 20.4 0.5 1 23 575 597 575 597 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTTAGTATAGAtacatttgataaaatatgccgTGTCTGTTTAATACAATGTGCCGATATGAAATCCCTGTTTACAAAAATAGTCGAAGAAAAACGCAACTTGTTTGAGATTTTAGGATTTActgcaaatattaatattaactacgAGGATCCTCTGCCGAAACAGGTTTGTAGTGAATGTGAGACGGTCATGTGCAAGGCTGATGCATTTAAACGCCGTTGTCTTAACTCTGACACGATTTTAAACGAGATTTACCAAAATTCTTTGATCGTCGACGATCCTTCTTTAAACGACAAGAAATGCTCAATAAAGGATGAAAATGGGGATTTAGCTGATAAATTAAGCTCGTATGTTACTTCTGAAGTTCCAAACACGGCAGATTACGATACACAAGATCACTTTGACAAGAAAAATGTTGTGGTACATGATACTTCGGTTTTTGCTGTTACTGGTGGTAATTTCTGTGAACAAACTGACACTGGAGTATCAGTACACCCTGAACAATTGGTTAAAGAAGAGATGAACCTTAATTTTGATGAAGATATAGGATTTCCTGACcattatgatgatgaaatgCCATGTACTACATCTCCAAATGATTTGAAAGAACAAGCACCtgaatattcaatgtacaaatGTCAATGCGGCACAACATTTCAAGAAAAAGACAAATACGAAAGCcataaaaagcaaaaatgtaaaaataagaaagttataattaaaaaaaataaaattgtaagaaaaaatattgaattcggCTGTGGAGTATGTAgttctaattttaataatttgaatgctttaaaacaacatcaacaAGTACACTGTAACGAAATTGATACTAAGCCGCAAGTACATATTTGTAAATTGTGCTTAGTCCCGTTCAAAACGAAGTCTGCGTTGAGTAGCCATATAAAAAAGCATGAAAAAACTGTAAATAGCAAGTCTGAAACTTACCAATGCTCATTTTGTTTACGGAAATTTAAGAATAAGTCTTCGTTGTCCACTCATATGCAACGCCATGAACAGACGGACAGTATAAAACATACATGCAAAGTGTGTAAGAGAGAATTTAAGTACAAAGCTTATTTAGATAATCATATTTCGACAATGCATTCAAGAAAGAACGGAATTAGTTGCGAATTGTGTGCTCAGAATTTTCCCAGCGAAGAGAGTTTGGAGTTACACAGAGATAGTCATAAGAATGAGAAAAAGCATCGCTGTACGGTTTGCAATAAAGGGTTTTTGATGTTGTGTACTCTTAAAGAACATATGCGTACTCATACGGGTGAGAAACCGTTCTTATGTTCACAATGCGGACGAGGGTTTAGTCAGAAAACTAACTTAGCGCAGCACATGAGAAGGCATCAGGGCTTGAAGCCGTTTAAAtgtgaaaattgtgaaaaaagATTCGTATCCAAAGGTGAATTGGACGCTCACAACAGGAAACACAGTGGAGCACACCCCTTCGTCTGTGATGACTGTGGCAACGGCTTTACAACTTCAAGCGCTTTGGTCAAACACAGACGCATACACACCGGAGAGAAACCCTACCAGTGTGACCTTTGCCCGATGAGGTTTGCAGCTTCAGGGACTCTTAAAAACCACCGAAGAACTCATACAGGTGAACGGCCTTTCCAATGTTCGTACTGTGAGAAAGCTTTTGTGCAACGCAATGATTTGATTTCTCATATCCGCTGTCATACGGGTGAGAAACCTTATATTTGTATGCAGTGTGGACAGTCGTTTAGGAAGGCTTCAGGGTTGAAGAGCCATGTGAAGATGCATGTCAAGGAACCGGTGTTGATGCCCGGTGTGAATGCAATGTTGAACGGTATGCACTGTGCTGAGCAGTGA
- Protein Sequence
- MEVSIDTFDKICRVCLIQCADMKSLFTKIVEEKRNLFEILGFTANININYEDPLPKQVCSECETVMCKADAFKRRCLNSDTILNEIYQNSLIVDDPSLNDKKCSIKDENGDLADKLSSYVTSEVPNTADYDTQDHFDKKNVVVHDTSVFAVTGGNFCEQTDTGVSVHPEQLVKEEMNLNFDEDIGFPDHYDDEMPCTTSPNDLKEQAPEYSMYKCQCGTTFQEKDKYESHKKQKCKNKKVIIKKNKIVRKNIEFGCGVCSSNFNNLNALKQHQQVHCNEIDTKPQVHICKLCLVPFKTKSALSSHIKKHEKTVNSKSETYQCSFCLRKFKNKSSLSTHMQRHEQTDSIKHTCKVCKREFKYKAYLDNHISTMHSRKNGISCELCAQNFPSEESLELHRDSHKNEKKHRCTVCNKGFLMLCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYICMQCGQSFRKASGLKSHVKMHVKEPVLMPGVNAMLNGMHCAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01361889;
- 90% Identity
- -
- 80% Identity
- -