Slit015238.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- -
- Assembly
- GCA_002706865.1
- Location
- NC:10442747-10463452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7e-05 0.0021 18.3 6.9 1 23 195 217 195 217 0.98 2 13 2.6e-06 0.00015 21.9 0.5 3 23 231 251 229 251 0.96 3 13 0.00014 0.008 16.4 1.4 2 23 260 281 260 281 0.98 4 13 0.00023 0.013 15.7 1.5 3 23 289 309 287 309 0.95 5 13 8.5e-06 0.00048 20.3 1.5 1 23 315 337 315 337 0.97 6 13 1e-05 0.00057 20.0 8.5 2 23 344 365 343 365 0.97 7 13 4.3e-06 0.00024 21.2 1.2 1 23 371 393 371 393 0.98 8 13 8.6e-06 0.00049 20.2 1.3 1 23 399 421 399 421 0.99 9 13 0.00039 0.022 15.0 3.2 1 23 427 449 427 449 0.98 10 13 9.8e-05 0.0055 16.9 1.3 1 23 455 477 455 477 0.98 11 13 2.9e-06 0.00016 21.8 1.3 1 23 483 505 483 505 0.97 12 13 2.2e-05 0.0012 19.0 1.3 1 23 511 533 511 533 0.98 13 13 0.00042 0.024 14.9 3.0 1 23 605 627 605 627 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCTCCCAATAAACCATTGAAATTCGACAAAATATGTCGTGCTTGTTTGGAGATAAAAAAGGACATGAGACCCCTGTTTGAGCAACTCACGGCTACAATGTTGATGGGTATAACGAAAGTGCAGGTGGCAGTTGGAGATGGTCTACCTGCACAGCTGTGTCTGCAGTGTGTGCACCAGATATCACGGTGCCACGCTTATAAGGACCTCGTGGAGAGAAATGACATCGTTCTGCGGGAACACGCCGCACGTATGGCGGAAGAAGCTTTCAAAAGAGAGAGGGAAGAGAAAGAGAAGTTGTTGACGTTGAACTGCCAGGAGAACTATATGCAATACATGGAGGTGCCGCTGTCGAACCCCAACCAGATCCTGGAAGGATTCTTTGGCGCAACACCAGAACAAACGCCGACAAATGCCTCCGAGCAGGAGACGAAAATCGAATTCGAAGTGGAAAAGATAGAACCAAATCAGCCTGAGAGTGAGAATCAGATAAAAGACAAAGAAGGTTTAAACTCTGATGAAGAGAATTACCTTCAGATGGTTTTGTTTCAAGCGACAGCCACGATGCCGCCGGGACGCCATGTATGTAACCTATGCCACAAAGAGTTCAAGCATGCGCGGTGGCTCAAGCAACACATGCGCTCGCACACAAACTGGATCAAAGCTAACTGCAAGAAGCCACACTTGTGCCCGATCTGTGATAGGATTTTTAAGGGTCCAGGTATGTTGAAAATGCACATGCGCACGCACGAACAGCGTCCCGCGAAGCAACCGACTTGTTCCGTCTGTCAGCGGATCTTCCCGAGCAAGACGTTGCTGTACCGCCACAGACAGACTCACTTCGAACAGAAGACTCACTTGTGTTCCGTGTGTGACAAGCGCTTCTACAGCGGGTACGCGCTGCGCTCGCACATGGCGCGCCATCGGGGCGAGCGGCCCTACATCTGTACTACTTGCAACAAGAGCTTCTACAACCCTACTGACTTAAAGGTTCATTTTCGTCTGCACACGGGCGAGAAGCCCCTGAAGTGCAACGAGTGCAACAAGACGTTCCGTCGTCACTCGACGCTGTGCCAACACATGAAGAAGCACCGCGGCATACGGAACCATGTGTGCAATGTATGCAACAAGAGCTTCTATGAAGTATCCAAGCTCAACGCACATATGAGGATCCATACTGGAGAGAGGCCATACGAGTGTCAGTTCTGCGACCGTCGTTTCGCGCAGAAGTCTGCACTGATCTACCACAGCCGGACCCACACGGGGGAGAAGCCTTACTGCTGCAAGGTCTGCTCCGCCAGGTTCACCACCTCGTCCGCCAGGAACAACCACATGCTCACACATACTGGGAACAAGAAGTTCGTGTGTCCGATCTGCCTGAAGGGCTGTACGTCCCGGTCCGAGCTCCGCGTCCACACGAGCAAGCACACCGGCGAGAAACTGTTCGCCTGCGACCACTGCGGACAGAGGTTCAGCTCCGCCTCCTACCTCGCCGTGCATCGGCGGTACCATACCGGGGAGAAGAAGTACCACTGTCCTGTCTGCGGGAAAGGTTACGTGGAGTCTAGTTCATACAAGAAGCACGTGAAGTCCCACGGCGCGGCGGACAGTAAGCCAGACGGCAACGGCACCGACCTCGCGGAACGTACTGACGCACTGCCCGCGCCGGGGACTGACATACAGTCTGCCGCCGCTGACGATTCTAATGATGGACAGAACCAAGgTCAAGTGCAAATCCAGGTGCAGGAGTCTCAGCAAGTAGTCCAGGTGCAGCAGTCTGCAGAGCGTCCGTTACAGAAGGTGTATCGGTTCAAGTGTGGGTTCTGTCCCAAGACGTACATGTATCTACACAATCTGAAGAAACATACCGCGGTGCACTCGGACGAAATGAGTCGCAACGCAGAACAAATACTTATAATGCAGCAACCGCAGcaacaacagcaacaacaacagcaacaacaacagCAACAGCAACAACAGCAGCAACAACAAGTGCAAGTACAACAACAACAGATGCAACACCAGGTGCAACAACACCAAGTGCAACAACAGGTGCAGCAACAAGTGCAACAACAAGTCCAGCAACAAGTACAGCAACAGGTGCAACAACAGGTGCAGCAGCAAGTAGCAGCGCAGCAGTTGCAGCAGCAGGCCGTGTTGCAGGTGGGAGGCGTCCCGCAGCTGGCGCTACCGCTGCACGCGCAGCACGTGGCGCCCGGCCTCGTGTCCGGGGTGCACGGACAGAGCCAGCACCCGTACCCGGTGATATCATCAGTGCAGTCTCTACAGCTGCAACAAAGTCAACAGGTTAACGCGCAACAGCCGCAGCAACTTCAAGTACAAACGATACAGATCCACCCGCAACATCAGCCCATACAGATACATGCTGTAGGCGTGCAGCAAGTCCAGCAACAACAGTTACACGTCGCCACCTCCTCCTGCCAGACCATGCTGCCCAACATACTGCAGTTACAGCCCGCGACGGTGGCAGTGTCAGGTCTGTCGCAGCAGGAGCTGGGCGGCGTCACGCACCGCATCATCCTGCAGCCGCAGCCCACCGCCGCGCACCCCGCCGTCTACACCATACACCACTGA
- Protein Sequence
- MAAPNKPLKFDKICRACLEIKKDMRPLFEQLTATMLMGITKVQVAVGDGLPAQLCLQCVHQISRCHAYKDLVERNDIVLREHAARMAEEAFKREREEKEKLLTLNCQENYMQYMEVPLSNPNQILEGFFGATPEQTPTNASEQETKIEFEVEKIEPNQPESENQIKDKEGLNSDEENYLQMVLFQATATMPPGRHVCNLCHKEFKHARWLKQHMRSHTNWIKANCKKPHLCPICDRIFKGPGMLKMHMRTHEQRPAKQPTCSVCQRIFPSKTLLYRHRQTHFEQKTHLCSVCDKRFYSGYALRSHMARHRGERPYICTTCNKSFYNPTDLKVHFRLHTGEKPLKCNECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKSFYEVSKLNAHMRIHTGERPYECQFCDRRFAQKSALIYHSRTHTGEKPYCCKVCSARFTTSSARNNHMLTHTGNKKFVCPICLKGCTSRSELRVHTSKHTGEKLFACDHCGQRFSSASYLAVHRRYHTGEKKYHCPVCGKGYVESSSYKKHVKSHGAADSKPDGNGTDLAERTDALPAPGTDIQSAAADDSNDGQNQGQVQIQVQESQQVVQVQQSAERPLQKVYRFKCGFCPKTYMYLHNLKKHTAVHSDEMSRNAEQILIMQQPQQQQQQQQQQQQQQQQQQQQQVQVQQQQMQHQVQQHQVQQQVQQQVQQQVQQQVQQQVQQQVQQQVAAQQLQQQAVLQVGGVPQLALPLHAQHVAPGLVSGVHGQSQHPYPVISSVQSLQLQQSQQVNAQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVAVSGLSQQELGGVTHRIILQPQPTAAHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094252;
- 90% Identity
- -
- 80% Identity
- -