Basic Information

Insect: Spodoptera litura
Gene Symbol: -
Assembly: GCA_002706865.1
Location: NC:7076359-7086527[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.1e-07 4e-05 23.7 0.9 1 23 186 208 186 208 0.98

2 14 0.01 0.57 10.6 3.9 1 23 214 237 214 237 0.96

3 14 6.5e-07 3.7e-05 23.8 2.4 1 23 243 265 243 265 0.98

4 14 1.8e-06 0.0001 22.4 3.1 1 23 270 292 270 292 0.99

5 14 0.00013 0.0074 16.5 5.7 1 23 298 320 298 320 0.98

6 14 5e-07 2.8e-05 24.1 1.0 1 23 326 349 326 349 0.96

7 14 1.2e-05 0.0007 19.7 2.5 1 23 355 377 355 377 0.97

8 14 1.3e-05 0.00073 19.7 0.8 1 23 383 405 383 405 0.98

9 14 0.00033 0.018 15.3 1.7 1 23 411 433 411 433 0.99

10 14 2.7e-07 1.5e-05 25.0 2.5 1 23 439 461 439 461 0.98

11 14 3.1e-06 0.00017 21.7 3.6 1 23 467 489 467 489 0.98

12 14 0.054 3.1 8.3 2.9 1 23 495 514 495 514 0.95

13 14 1.6e-06 9.1e-05 22.5 0.8 1 23 520 542 520 542 0.98

14 14 5.4e-05 0.0031 17.7 3.1 1 23 548 570 548 570 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.1e-07	4e-05	23.7	0.9	1	23	186	208	186	208	0.98
2	14	0.01	0.57	10.6	3.9	1	23	214	237	214	237	0.96
3	14	6.5e-07	3.7e-05	23.8	2.4	1	23	243	265	243	265	0.98
4	14	1.8e-06	0.0001	22.4	3.1	1	23	270	292	270	292	0.99
5	14	0.00013	0.0074	16.5	5.7	1	23	298	320	298	320	0.98
6	14	5e-07	2.8e-05	24.1	1.0	1	23	326	349	326	349	0.96
7	14	1.2e-05	0.0007	19.7	2.5	1	23	355	377	355	377	0.97
8	14	1.3e-05	0.00073	19.7	0.8	1	23	383	405	383	405	0.98
9	14	0.00033	0.018	15.3	1.7	1	23	411	433	411	433	0.99
10	14	2.7e-07	1.5e-05	25.0	2.5	1	23	439	461	439	461	0.98
11	14	3.1e-06	0.00017	21.7	3.6	1	23	467	489	467	489	0.98
12	14	0.054	3.1	8.3	2.9	1	23	495	514	495	514	0.95
13	14	1.6e-06	9.1e-05	22.5	0.8	1	23	520	542	520	542	0.98
14	14	5.4e-05	0.0031	17.7	3.1	1	23	548	570	548	570	0.97

Sequence Information

Coding Sequence: ATGTCTGTGATATGGAATACTAGTGGCctatgtcgttgctgccatgCTGAGGGCGATTTCAAGAGtttaaatgaatattcaaaCGAGATATCTGGAGAtgattgttatgttttgttaaaagaCACGTTTGATATTATTCTTCACCCCGTACCAAACTCCACAATCCTGGTGTGCGGTGTCTGTGGTCCGCGGCTGAAGGATGCCGTGCAGTTCAAGAAGCAGGTGCTACAGTGTGAAGACAAGCTAAGGCAGTATGGGTTTAaagAGGCTGATATTTTGCAGAAAGATATAAAAGATGAATTTGTACAAGATGaactgaAAGAGGAATCTGTTCATGATACTGAAGACAGACTGGACATCAAATATGACGTAGCAAGGCTGCCAGGAATAGAAGTGCTAATCCAACCTATAGAAGATGATGACCAGCCACTCTCAGTGCTGAGGAGCCGCGCCATATCTGAGGAGTGTGATGTGGAACCTGATGCTGATTGGACAGCGCCGCCGGATTTGAGTGATGACGACCAACAAAAGCACAAGacacaaaaatcaaaaaagtacaCCTGCTCTATATGTGACAAGAAATTTTCATACAATGGCTCCTTCGAGGTCCATATGAAAGCTCATAATGGTGAGAAAACCTTTAATTGCCACATCTGTGGCTCTTCACACACAAATAACAGAGAATTAACTAAACATATAGAAAAACAACATATAGTAGATAACAAGTACCCTTGTCATATCTGTGAAAAATCATTTGAAAAGCCCCggctattaaaaaaacatttaaaaactcaTTTTGAAGAGAAATTTAAATGTACGGAGTGCCAGAAAGAGTTTCAAAGGAAGAAAGGCTTAAAAGAACATATGAAGACACATACAGGTGAGAAGAAATATTGTTGTACGGTCTGCAATAAGGCTTTTGGTCACAATCAGACACTAAAATCTCATATGTATACCCATACCGGTGAAAAACCATATGTATGTGATGTTTGTGGGAGACGGTTCCCTCAACGGACACATTTAAAgagacatatatatataatacatactgGTATCAAACCACATAGTTGCAATGtgtgtaacaaacaattctCAAGCAAAAGTTACCTAGCTATACATGAAAGACAGCACACCGGTGAGAAACCGTACTCATGTGAGGTTTGCAAAAAAGATTTCACAGCGTACACAACCTTGAAAGTCCATATGCGAGTGCATACTGGTTTCAAACCGTACTCCTGTGGTTTTTGTAGCAGACAGTTCGCTCAGATGGCAAGTTTCAAACTTCATCAACGGACTCATACCGGTGAAAAaccattttgttgtaaaatttgTAAGAAAGCATTCTCTGATAATGGCTATTTGAAGATTCATATGAGAGTTCATTCCGGAGAGAAGCCTTTTAGCTGTGATGTGTGTAAACGGTGTTTTAGAGAGACGGGGCAGCTGAAAAGACATATGCGGATACATACTGGGGTTAAAGCGTATACTTGTAAAATTTGTAATAAGCAAATTGGGAATCTGTCCAAGCACATGCGTGTCCATACAGACGAGAGACCATTTTCATGTAATGTATGTCAgaaacagttttctataaatggTAATTTGAAACTACATATGCGTATCCACACTGGGGAGAAGCCATTCGCTTGTGATATGTGTGATAGTCAATTTACACAAAGCAGCGGCTTAAAAAGACATCGATGTACGCACGGTAAAGATTTAGGCTCCTAA
Protein Sequence: MSVIWNTSGLCRCCHAEGDFKSLNEYSNEISGDDCYVLLKDTFDIILHPVPNSTILVCGVCGPRLKDAVQFKKQVLQCEDKLRQYGFKEADILQKDIKDEFVQDELKEESVHDTEDRLDIKYDVARLPGIEVLIQPIEDDDQPLSVLRSRAISEECDVEPDADWTAPPDLSDDDQQKHKTQKSKKYTCSICDKKFSYNGSFEVHMKAHNGEKTFNCHICGSSHTNNRELTKHIEKQHIVDNKYPCHICEKSFEKPRLLKKHLKTHFEEKFKCTECQKEFQRKKGLKEHMKTHTGEKKYCCTVCNKAFGHNQTLKSHMYTHTGEKPYVCDVCGRRFPQRTHLKRHIYIIHTGIKPHSCNVCNKQFSSKSYLAIHERQHTGEKPYSCEVCKKDFTAYTTLKVHMRVHTGFKPYSCGFCSRQFAQMASFKLHQRTHTGEKPFCCKICKKAFSDNGYLKIHMRVHSGEKPFSCDVCKRCFRETGQLKRHMRIHTGVKAYTCKICNKQIGNLSKHMRVHTDERPFSCNVCQKQFSINGNLKLHMRIHTGEKPFACDMCDSQFTQSSGLKRHRCTHGKDLGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01361881;
90% Identity: -
80% Identity: -