Slit013681.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- lov
- Assembly
- GCA_002706865.1
- Location
- NC:3881204-3912380[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-18 1.9e-15 56.1 0.0 1 44 307 350 307 351 0.96
Sequence Information
- Coding Sequence
- ATGGACGACAAGCCGTCCGCCGTCGGCGGCGAGGAACATTACAGTCTCCGGTGGAACAACCACCAGGCTCACCTGCTCCGCTCCTTCGAAGCCTTACTGCATGCTGAGACACTAGTGGACGTGACACTGGTGTGTGCCGAGCGCCGCGTACGCGCGCACAAGGTGCTGTTGGGCGCTTGCAGCCCACTATTTCGCAGAATATTTAGCGAAAATCCGTGCAAACACCCAGTGATCGTGTTGAAAGACTTCCAAGGATGGGAAGTTCAAGCCGTGGTAGACTTTATGTATCGTGGCGAGGTGTCAGTGGCGCAGGAGCAGCTCGGGACTGTGATACGCGCCGGAGAATCACTCCAAGTTCGCGGTCTAGCCGACCAAGACCGCGAGGAGTCTGCCAGGTCCCCAACTGCAACTCCACTGGCACGAAGTCCAGCACAAGCGACACCACCAGCACCATCTCCACCAGTAAGCCCGGCAAGTCCTCAGCCACGACGGAAGCAAGCCAGGCCTCGTCGTCGCTCAGGAGAATCAGATACACCAGAAAATTTATCGATGCGTCGATCCCCTAGTGGAGGACTGAAGGCAGTTCGCCTGTCGAGGCCTCGCTCACCACCAAAGCAAGAGCAAGAGGAGCCTGAGGCTGAAGTGCCGCCGCCACCACGTATGTTCGCGCCACACCAGGACATGTTTCCCCCAGTACCACCAGCTGCCGTCTCCGCGCTCTCATTAACACCACCACACATGTTTGGCATGGACACTCCGCTAGGACTCTTCCCGCCAGGGATGGAGCACAAGATGTACCCCATGATGGACGTAGAACACCGCGCGCCGCTTGATTCACAACTATTCACTAACGTGAAAAAGAAATGGCGACCAAAGGGTCAACACAGCGCGCCGCGCGGTGGTCCACCTCGATCGTGGACGAACGCCGAGCTGACGGAGGCGCTGCAGCACGTGTGGAACAAGAAGATGACGACCAGCCAGGCCTCAAGGATCTTTGGCATCCCATACAACTCGCTGCTAATGTACGTGCGCGGGAAATACGGGAAAAGCCTAAAGTTGGAGCAGCTCAGGAAAGACTGTATTGGCGGCCCCCTCGACGTATTAAATCTTAACTCCggaaacaacaacaacaaccagCCTTCGGGAAAACATCACGACAAAGACGACCACTCACAACGACCAGCGAGCTCCGAGCCAGACATCGCCTCAAATCCAATGTTCAATCCATTCCAGCAAGGGTTCTACCCGGAGTTCGCTCCAGGTTTCCCGATGCCACTCAACATGCTACATCTACTCCCGCCTAATGATAAGGCGAGGGAACTATATCAGTCGATGCCGATGGCTCTGGACTCGCTGTCAGGAGTTACGAAGGAGGAAGACTGTAAGAGTGATAGGTCGAAGGAGAACTCCGCCGACGAAGAGGGCGAGTCGTACCGCGCGCCCTCGCACCCGCCGCATCCACCCGACAACCGCACACTGCTGCATCACAACGGCCAGGACTAA
- Protein Sequence
- MDDKPSAVGGEEHYSLRWNNHQAHLLRSFEALLHAETLVDVTLVCAERRVRAHKVLLGACSPLFRRIFSENPCKHPVIVLKDFQGWEVQAVVDFMYRGEVSVAQEQLGTVIRAGESLQVRGLADQDREESARSPTATPLARSPAQATPPAPSPPVSPASPQPRRKQARPRRRSGESDTPENLSMRRSPSGGLKAVRLSRPRSPPKQEQEEPEAEVPPPPRMFAPHQDMFPPVPPAAVSALSLTPPHMFGMDTPLGLFPPGMEHKMYPMMDVEHRAPLDSQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDVLNLNSGNNNNNQPSGKHHDKDDHSQRPASSEPDIASNPMFNPFQQGFYPEFAPGFPMPLNMLHLLPPNDKARELYQSMPMALDSLSGVTKEEDCKSDRSKENSADEEGESYRAPSHPPHPPDNRTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00784544;
- 90% Identity
- iTF_01139058;
- 80% Identity
- iTF_01363262;