Slit011210.1
Basic Information
- Insect
- Spodoptera litura
- Gene Symbol
- Jarid2
- Assembly
- GCA_002706865.1
- Location
- NC:2109465-2150257[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-17 3.5e-14 52.8 0.0 11 89 945 1021 938 1021 0.88
Sequence Information
- Coding Sequence
- atgaGCGCGCCGCGTTCACGTCGGGTACAAGCCCAAAGAAAGTTTGCTCAGGGCGCGTACGTGCCTCCAAACCCAGCAGCGGTGGCAGCCGTGGACAACAGACGCGATGCCGCCCAAGACACGCGCAATGTGACCATCAATAACATGACAGCGTCGAACTTGCTCGACGTGGTCTCACTTCAAGGTGTAGCAGGTCCGCAAAATAGGacattagGTCTTCATACCCACTTGCAACCAGTAGTGGTTGTAGAGAGACTCCGTCAAACAAATCCATGCAGAGATGAAAATATGGAAACTGTCACTAAGCCTCAAGAACTTGTTATAGGCGAGACAGGTAGTACCCGTTCTGTGGACAATGAATGTTGTACAAGAGATATGCAAAAGCGGCTTAAGGAAAGTCCCACAAGCAAGTCTAGTCCTTATAATGCacattttaatagtaataaacaTGAATATACAAATGGTGATGTAGTTGAAAACAGTCATAATACTTGTCCTTATGCGAAAGAAACCCCTGAAAACAACAAACAAGAACCTCGGACTAATGAACAACATAATGCAAACAAAGATATTGCTTCTAAAGTCAGAGAGCCTTTTGCTACGGCCAAAGAGTATAGTGGGAAGAATAAAGAACTTCTTAAAGAATCTAGtacaaaagtcaaaacaaaTACTAAAGGAAAAGCgaatactaaaaacaaaacaaatactaaaGGAAAAGcctttaataaacataaaattggtAATAAAGGTAAAGGATCCAGTGCTAAAGCTAAAAGTGGTAGTAAAGTATTCAGTAATAAAGGCAAACAGACCAGAAGTAATGACGACAACTCATTAGCCGCTATCCTGAGGGCCTTACAAAAGACTAAAgataacaatttacaaaaaacacATGCAATGTCTTTGCGCCAACGACGTTTAAGCAACGGTAGGGTCTGCGCAACTACCGCCAAAaagttaaaagtattaaaaagtaaaatcatAACGAATAGAAAGAAAACTGAATCACCTAACCGTTATTCTCCATCATCCGAATTCTCTATCGAAGATAATCGACCATTGACATATTACGCCCAGAATAACAAAGCCAATAAAAAATCACCAAAGAAACGAAGCCATACTAGTGACCCTCCAATTTCAGAAGTGGTACTTCTTGAACGGAGTTACCCAAAGAGAATTATGTTAGACCCCTATGTGCCATCACCCCTGCCAGACCCGATACCGAATCGGATACAAAGCCATCCGGCAGAACCTGTCGCTGGACCCAGTGGACTACAAAAGACAATATTGGAGCCTGTGGCGGGACCTAGTGGGCTGCAAAGAGTAACCATAGAACCAGTAGCCGGGCCTAGTGGGCTTCAAAGGGCTTCTGTACCGGTGGCGGCGCCTAGTGGGCTGCAAACTGTAACATCTGCACCAGTGGCCGGTCCTAGTGGGCTGCAAAGGGTAACTTGCGCACCAGTGGCGGGGCTTAGTGGGCTACAAAGGGTAACATCTGCGCCAATGGCTGGGCCTAGTGGGTTGCAAAGGATAACATCTGCACCAGTGGCAGGGCCTAGTGGGCTGCAAAGGATAACTTCTGCACCAGTAGCAGGGCCTAGTGGGCTACAAAGGGTAACATCTGCACCAGCGGCGGGGCCCAGTTGGCTGCAAAGGGTAACTTCCGCACCAGTGGCAGGGCCCAGTGGGTTACAAAAAAGAGTGTTACGGAATTCTGGATTTTCTAGGGGTCAGAGCATCGAGTCACAAGATGAAGACCTAGACCAAgacataaaagttttaaaatgctTTACAATACCTCCTTGCTTCGCGGAAAAATGGCGTACTGTACAACAAGTCATTAATGCACCTAAAGATGAAATGGACAGCCGCTGTACTCTATGTGTTGCGTGTTCAAGAATAGATAAACTAACACAATTGTCAAAACTACTTTATAGATTTGATTTAACTGGAACCAATCAAACATCCGTAGAATCAGAACCAGAAAATGATGATGAGTCCGAGAATGATGACCCTAAGCCGTTAGAAGAAGATACTGGCCATATGTATCTCGATCTGCTTCCGAAACATCCGCGTCTCATGATGAAACTCCGGATACACGAGGTCCATGGAAAGCAACTTCTGTCAGCTTGCTTGATACCAAAGAATGACGCCCGTAAAAATAGTGAGGATTTCTTGCTTGAAGAGAAGGAACACCTACTAGACCaactaataaatactctatCTATTAGTTTACCCCATGACATGGTAACAATGGGCAATTCTCAGACAGGAAGTACATTTGAACGACTTCAAGGTATAATATCCAAACTGGACCATGAAAACGAGCCTGAACGTGCACATCCTCTTGATAAACTTCGAGCTAACGTTAAGGCATTCGGTGCTAACGTACAGGAACCCCAAGCTAGTATTCAGAGTCGGATTGTTGAGCGCCACACGCTAAACAACGTGTACGAAGAAGGTGACGACGCCGTTAACGACGTTAATTCCGACGAAGAGGAAGGTAACTACGCCAGAGAAGGGAATGAACGGATTAGTGCTGAACATTTAAACGAATGTAGCGCAGACACTTCTCAGACGCATGCTGTAGGGGGCGCAATGCAGGATGGTCTAGTATTTAGGCCGACAAAGGAAGAGTTCCAAAATCCTATGGAGTATTTTATGAAGATTTGGGACGAAGCGTGTGAATAcggtatttgtaaaataattccaCCTCCAGGATGGAGACCGAAGTGTCAGAGTTGTGATGGTATCAGATTCGACGTGGCAAAGCAGTTTACATCTCGAATGTTCCACCGGTGGGGACCAGCTATGCGAGAATTGGCATGTATAAAGTATTGTGTCTCGCAATCAACTGGTTTTCCTTGTAGCACACCAACGGTTGGAGGTATGGAAGTTAATTTACCTAAGTTATACCATAGCGTACAACGTCACGGTGGACTAGAACTTGTGCTTAATAAGAAACGTTGGGGGAAAGTTGGACGCGACATGAACTTGTCTATGAGTATAAACTATCTAAATAGACTAGATCAGCTCTACTCGAAGTACCTTCTACCCTATGATTCTCTTTCGCCAAgtgaAAGAAGGGAAATCTTTGGTGTGATTGAAAGGGCATGGACTCGAAAAAATCAAAGGCTGTTGGACCGCGCACTGAACCCGTTTCGTGCGCAGAATCGTTTGATGGGGCTAAATGACATTCAGGAAGAACCGGAGGAACAGTCTCTTGTCATGAATGCTGTCAAAGAGGCAGAAGATTGCATCGTGCGAGGTCCAATCATGAACTACACTAGGTTTAAAGAGCTCGCTGAGTTTACATATAGTGTCGTTTATGGTTTTGGTAACTCTAGAGAGAACAATCCTATGAGTCTTGAACAGAAAGAAGAGTTGTACTGGCGCTATGTGCTTCAGGGCAACGAGCATATTTGTGTCGCCACTGCCGCTATTGATACTGGTTCCGACCCTTCGCGAGGAAGTAGTCGCACGTTAACGTTGAAGGATATTAGCCAGAATAAAGACAATATCCTTCGCTTTCTGGGTGCTGTGTCCGGTTTAACTGCACCCACTTTAAACCTGGGGATGGCATTTTCAACAAACTGTTTCTACTTGGACCCCCACGCTGTGGCCTGGCTGGACTTATTATATAAAGGAGATCCAAGAATTTGgTATGCGATTCCAGCCAAGCAGACTGAAAACTTTAAGAAGGCAGTTAGCTCTCTCTGTCCTTCTTTTTGTCAAAGGAAATCTCTGTGGCTCTCAACAGATATAGCTATGATACCGCCCCACCTTCTTCGAGAGTACAATGTTTCAATGACGCGCGTCGTACaggaagaaaatgaaataatactgGCTTTTCCCTACTGTTACACCTCGTCTATAAACACGGGCTATTCCGAATCAGAGAGCATATATTTCGCACCGCTTTCCTGGCTACATACCGCCTACGACGTGTTCAAGGAGGCTCGTGAAAATTGTGAGCCTACGATGTTCTCGCTCGAAGAGCTGCTATTGCGAATAGGCAAAGCGACTTGTGTGGACATGGCCACTCTCAAAACCGCACAGCCAATTTTCGATAAAGTTTTGAGAAATGAGATCACAAAGAGGCTTATCTTGCAAGAGAGAGGCATCAAAATGGTGCACCAGCCTGATATTCCTAAACCGAAAAATACGGGTCGTCGCAGAAGACGAAACAGAACATTTATTCAAGAAGAATGTGAATACTGTAGAGGTACACTGTTCTTCTCAAAGGTTGTCGGCTTAGTGCGTAACTCTTATCTATGCTTAGAACACGCACTAAAATTATTGACCGTTAAGAAGATGATTATTACTGATGATATGCAGATTATTACGAAGGTAACAATTGAAGAactaaataatgtcaacaatgaCATGAAAAGACGTATCGAAATTGGCTTTGTGGGGCCAGATGTCATCATTGATTAA
- Protein Sequence
- MSAPRSRRVQAQRKFAQGAYVPPNPAAVAAVDNRRDAAQDTRNVTINNMTASNLLDVVSLQGVAGPQNRTLGLHTHLQPVVVVERLRQTNPCRDENMETVTKPQELVIGETGSTRSVDNECCTRDMQKRLKESPTSKSSPYNAHFNSNKHEYTNGDVVENSHNTCPYAKETPENNKQEPRTNEQHNANKDIASKVREPFATAKEYSGKNKELLKESSTKVKTNTKGKANTKNKTNTKGKAFNKHKIGNKGKGSSAKAKSGSKVFSNKGKQTRSNDDNSLAAILRALQKTKDNNLQKTHAMSLRQRRLSNGRVCATTAKKLKVLKSKIITNRKKTESPNRYSPSSEFSIEDNRPLTYYAQNNKANKKSPKKRSHTSDPPISEVVLLERSYPKRIMLDPYVPSPLPDPIPNRIQSHPAEPVAGPSGLQKTILEPVAGPSGLQRVTIEPVAGPSGLQRASVPVAAPSGLQTVTSAPVAGPSGLQRVTCAPVAGLSGLQRVTSAPMAGPSGLQRITSAPVAGPSGLQRITSAPVAGPSGLQRVTSAPAAGPSWLQRVTSAPVAGPSGLQKRVLRNSGFSRGQSIESQDEDLDQDIKVLKCFTIPPCFAEKWRTVQQVINAPKDEMDSRCTLCVACSRIDKLTQLSKLLYRFDLTGTNQTSVESEPENDDESENDDPKPLEEDTGHMYLDLLPKHPRLMMKLRIHEVHGKQLLSACLIPKNDARKNSEDFLLEEKEHLLDQLINTLSISLPHDMVTMGNSQTGSTFERLQGIISKLDHENEPERAHPLDKLRANVKAFGANVQEPQASIQSRIVERHTLNNVYEEGDDAVNDVNSDEEEGNYAREGNERISAEHLNECSADTSQTHAVGGAMQDGLVFRPTKEEFQNPMEYFMKIWDEACEYGICKIIPPPGWRPKCQSCDGIRFDVAKQFTSRMFHRWGPAMRELACIKYCVSQSTGFPCSTPTVGGMEVNLPKLYHSVQRHGGLELVLNKKRWGKVGRDMNLSMSINYLNRLDQLYSKYLLPYDSLSPSERREIFGVIERAWTRKNQRLLDRALNPFRAQNRLMGLNDIQEEPEEQSLVMNAVKEAEDCIVRGPIMNYTRFKELAEFTYSVVYGFGNSRENNPMSLEQKEELYWRYVLQGNEHICVATAAIDTGSDPSRGSSRTLTLKDISQNKDNILRFLGAVSGLTAPTLNLGMAFSTNCFYLDPHAVAWLDLLYKGDPRIWYAIPAKQTENFKKAVSSLCPSFCQRKSLWLSTDIAMIPPHLLREYNVSMTRVVQEENEIILAFPYCYTSSINTGYSESESIYFAPLSWLHTAYDVFKEARENCEPTMFSLEELLLRIGKATCVDMATLKTAQPIFDKVLRNEITKRLILQERGIKMVHQPDIPKPKNTGRRRRRNRTFIQEECEYCRGTLFFSKVVGLVRNSYLCLEHALKLLTVKKMIITDDMQIITKVTIEELNNVNNDMKRRIEIGFVGPDVIID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -