Basic Information

Insect: Spodoptera frugiperda
Gene Symbol: BCL11A
Assembly: GCA_011064685.1
Location: JANIPB010000037.1:32778-46856[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.2 2.6e+02 2.8 1.3 1 23 179 202 179 202 0.93

2 6 5e-06 0.00057 20.6 3.3 1 23 469 491 469 491 0.97

3 6 1.6e-07 1.8e-05 25.3 0.7 1 23 497 519 497 519 0.99

4 6 5.4e-07 6.2e-05 23.6 3.2 2 23 737 758 736 758 0.97

5 6 7.1e-06 0.00081 20.1 3.3 1 23 764 786 764 786 0.99

6 6 4.6e-05 0.0052 17.5 0.4 1 22 794 815 794 815 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.2	2.6e+02	2.8	1.3	1	23	179	202	179	202	0.93
2	6	5e-06	0.00057	20.6	3.3	1	23	469	491	469	491	0.97
3	6	1.6e-07	1.8e-05	25.3	0.7	1	23	497	519	497	519	0.99
4	6	5.4e-07	6.2e-05	23.6	3.2	2	23	737	758	736	758	0.97
5	6	7.1e-06	0.00081	20.1	3.3	1	23	764	786	764	786	0.99
6	6	4.6e-05	0.0052	17.5	0.4	1	22	794	815	794	815	0.97

Sequence Information

Coding Sequence: ATGCGGACAGCGCGGCAGAAGGTGGCGGGTCCCCCGTACCAGGGAGCCTTCGCCCTTGCAGACATCGTACGCTTCATCCAACATAAAGTATCCTCCTGTGATAAGGATCTCACGTCCTACCACTGTTACAGTGCTGGACCGAATTCCGACCCTGAAGATGGTTCAAGACCAGGCCAGGTCTCAAGTGGGAGTACCAGCGCGCGGAGGCCGTCCCTTCTCACAGCAAGAAGGCCTCCAAGCAGCAGAGTGCACACTCCTCCCCTTGCTAGTCCCTCTATGGCACCTCCCGACCTTCTGGAAGATGGAGGAGCATCTAGCACACCTAAGAGGCTATTAGATGGTGACGTCGAAGTTTCAACGCCTAAAAGGCGAGCGTCAACATCACCGATGCCATCAAGTTCCCCGGACGAAGACATTAAGCCGAAGATCAAACAAGAACATATGGATACCACAGGATCTCCTGAGGATCAAAAGAAATCTAGGACTGAAGTTGCTGATGCCGAATCGAATACTATGCATAGTGAACCTAGCAACTATGTGTGTTCGACGTGCAAAGCCCGCGTGCACTCCGCATGGAGACTGCTACAGCACGTGCAGCATGTGCACGGCGTCAAGATCTACGTAGAGGCGATGCCCCAGCAGCAACCCAGCAAGCAAAACCACTCCACGTCGAGTACTTCCTCTTCGAGCTCAGGCTGTTCGTCCACTGGCGCACCACTCCCACCACCTTCACTGCGCCATCACCCCTTATTACCACCTCCAGACATGCACTCGCCTTTTGGAGTTGGTAGTTTACTTAGAATGCCATTACCAGGCAGCTTACCACCACTGGCTCATCCATCAGTTCCTCCTACGCCTTTGTTCGCAAGGCCAAATCACCACGATCACCGATTTAGAATGGAACAGCTAGTATCAGAGCAGTTTCGTCACCATGGTCTTAACTTAGCGGCGGCGGCTGCTGCCGTGGCAGCGAACTCACTGCCGCCGCACCAGACATTTCCATCGCCGGCGGACCGACCTCCGGTAGTTCCTACTTCGTTATCGGGGCGTGACAGAGCCCCACCCGTATCTCAACCCCTTTCACTTGAACCCCAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACGACCAGTCCAGGGGCGGCCACAGGCAATTCCAGCTCTCCTAGCCCCAGGAAGCATTCGCCTCCGTTCGCTTCCCCGTCGCCCTCCAGAGTCGGACAGACTCCTCCGGTGGGCGCCGGACCCGGGACGGTGGACGCGCCTCGCGAAGCTACGAGGCCGCACAGTTCAACTTCACCCGAACGTCGAATTGAACCTCTAGCGGCAGACGCACCGCCAACTGAGCGACCCACGTCAACGCCACCAGTGAAACGTAACACAGATGAAGGGGTTCATTCTTGCGAATTCTGTGGCAAGAAATTTAGATTTGAAAGCAACCTAATAGTTCATCGTCGATCGCACACAGGTGAGAAACCTTATAAGTGTACAGAATGTGATGAAGCTTTTGAAAAAGCCTCCAAATTAAAGCGACATATGAAGATTCATAGAGCACCTGATGCCAATACGGAAGATGGTGAATCTGGCGGTGATACCGGAGAAGACGATTCTGATGACGAATTAGAAGATGAGGAGTTAGATGGAGAGGAAGAGGAAGAAAATGAGGATGGAGATGACGTGGAAGAGGCGGAAGATTTAACTGTCTCAAACAGCAGTGCACCATCTGCTCCGACTAGAAAACAGACTCCTATAATGCCAAATAACGCACCCAGTGCATCTGTTGTTGGTGAATTAATGGACAAATTCGGATTATCGAACATTGCTCAATACAGTGAAGCTTTTAAACAAGCTTTGCAAGAATCAGGAAATTCTCTGAAATGGCAATTAGCTAAAGATAGAGACAATAACAACGGACCTCCTAGTGATAAACCAAATGGCATGCCACCAACCGCTGCTTTGCGTTTGAAAGAGGAATTTGCGAAGATGCCTCCTCAACCTCATCCGCTTTTCAACCCTTTTGAGAACCCTTTTGAAGCGTCCAAACGCATAAAATTGGACATGGATAGGGGTGAGGGGTGGTGGTTACCAACCTTGCATGCGCAGAGGCCGCCAGATAATATATTTGATGGCCTCAAAAACAGCGGTAACGGGTTATTACAGAACCCTTTATTGAAATCGAAAGAGGGACGACGAAATGATACCTGCGAGTTCTGCGGGAAAGTTTTCAAGAACTGCTCAAACTTAACGGTTCACCGCCGCTCCCACACGGGGGAGAAGCCGTACAAATGTGAACTGTGCTCATACGCGTGCGCACAGAGCTCCAAGCTCACGAGGCACATGAAGACGCACGGACGACTGGGCAAGGACGTTTACCGGTGCAGGTTTTGCGAGATGCCCTTCTCCGTGCCGTCGACGCTTGAAAAGCATATGCGAAAGTGTGTTGTGAATCAAAGTAATGGTGCTCCCTTAGCTCTATCCGATGACTCTAACGCGTGCCGTGACGAGGCCTCGTGA
Protein Sequence: MRTARQKVAGPPYQGAFALADIVRFIQHKVSSCDKDLTSYHCYSAGPNSDPEDGSRPGQVSSGSTSARRPSLLTARRPPSSRVHTPPLASPSMAPPDLLEDGGASSTPKRLLDGDVEVSTPKRRASTSPMPSSSPDEDIKPKIKQEHMDTTGSPEDQKKSRTEVADAESNTMHSEPSNYVCSTCKARVHSAWRLLQHVQHVHGVKIYVEAMPQQQPSKQNHSTSSTSSSSSGCSSTGAPLPPPSLRHHPLLPPPDMHSPFGVGSLLRMPLPGSLPPLAHPSVPPTPLFARPNHHDHRFRMEQLVSEQFRHHGLNLAAAAAAVAANSLPPHQTFPSPADRPPVVPTSLSGRDRAPPVSQPLSLEPQLDFYSQRLRQLAGTTSPGAATGNSSSPSPRKHSPPFASPSPSRVGQTPPVGAGPGTVDAPREATRPHSSTSPERRIEPLAADAPPTERPTSTPPVKRNTDEGVHSCEFCGKKFRFESNLIVHRRSHTGEKPYKCTECDEAFEKASKLKRHMKIHRAPDANTEDGESGGDTGEDDSDDELEDEELDGEEEEENEDGDDVEEAEDLTVSNSSAPSAPTRKQTPIMPNNAPSASVVGELMDKFGLSNIAQYSEAFKQALQESGNSLKWQLAKDRDNNNGPPSDKPNGMPPTAALRLKEEFAKMPPQPHPLFNPFENPFEASKRIKLDMDRGEGWWLPTLHAQRPPDNIFDGLKNSGNGLLQNPLLKSKEGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSNACRDEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01209675;
90% Identity: iTF_01539114;
80% Identity: -