Basic Information

Insect: Spodoptera frugiperda
Gene Symbol: -
Assembly: GCA_011064685.1
Location: JANIPB010000654.1:1077817-1082461[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0015 3.4 8.1 0.3 14 32 7 26 2 38 0.78

2 11 0.0035 8.1 6.9 2.5 6 33 24 55 22 61 0.72

3 11 0.0054 12 6.3 4.1 5 38 55 88 51 89 0.78

4 11 5.4e-05 0.13 12.7 1.2 5 43 83 117 81 118 0.87

5 11 0.0018 4.1 7.9 2.3 18 43 124 146 120 147 0.91

6 11 0.0019 4.4 7.7 2.7 18 38 153 174 149 181 0.90

7 11 0.021 49 4.4 2.3 6 31 170 195 169 203 0.70

8 11 0.012 27 5.2 2.3 19 38 210 230 205 231 0.86

9 11 0.0023 5.3 7.5 3.8 9 33 229 253 225 258 0.75

10 11 0.00072 1.7 9.1 1.1 14 32 261 280 253 283 0.76

11 11 0.051 1.2e+02 3.2 0.2 22 38 284 301 282 301 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0015	3.4	8.1	0.3	14	32	7	26	2	38	0.78
2	11	0.0035	8.1	6.9	2.5	6	33	24	55	22	61	0.72
3	11	0.0054	12	6.3	4.1	5	38	55	88	51	89	0.78
4	11	5.4e-05	0.13	12.7	1.2	5	43	83	117	81	118	0.87
5	11	0.0018	4.1	7.9	2.3	18	43	124	146	120	147	0.91
6	11	0.0019	4.4	7.7	2.7	18	38	153	174	149	181	0.90
7	11	0.021	49	4.4	2.3	6	31	170	195	169	203	0.70
8	11	0.012	27	5.2	2.3	19	38	210	230	205	231	0.86
9	11	0.0023	5.3	7.5	3.8	9	33	229	253	225	258	0.75
10	11	0.00072	1.7	9.1	1.1	14	32	261	280	253	283	0.76
11	11	0.051	1.2e+02	3.2	0.2	22	38	284	301	282	301	0.87

Sequence Information

Coding Sequence: ATGCGATCTCACACAAATGATACTCCGTTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATATTATGGCATACGGGAGAGACGCCGCATCGCTGCGACTTCTGTTCAAAGACATTTACTCGTAAAGAGCACTTGTTGAACCACGTCCGCCAACACACGGGCGAGTCGCCTCACCGATGCAACTTTTGTAGCAAGTCCTTCACTCGCCGAGAACATCTAGTAAACCACGTACGGCAGCACACCGGAGAAACGCCCTTCCAGTGTGGATACTGCCCTAAAGCATTCACAAGAAAAGATCACCTTGTGAACCATGTAAAGCGTCAGCACACAGGTGAATCCCCCCACAAGTGCTCGTTCTGCACGAAGTCGTTCACCCGCAAGGAGCACCTGACGAACCATGTGGTGAGGCAGCATACGGGCGAGTCCCCACACCGCTGCTCCTACTGCGCCAAGTCGTTCACGAGGAAGGAGCATCTTACCAATCACGTCAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGCGGGCCTTCGCGCGCAAGGAACATCTCAACAACCACATTCGGCAACACACCGGCGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGAGCTTCACCAGGAAAGAACACCTCGTTAACCACATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACGAACCACGTGAACCTTCACACGGGAGAGACGCCGCACAAATGTCCATTCTGCACAAAAACATATTCCAGGAAAGAACACCTGACAAACCATGTCTGCTCCAAGCAGTTCACTAGAAAAGAACAACTGGTTACACACATGAGGTCCCACAGCTGTGTTTTCCTCTGTAAAGGTCACTTAGTATCACATCGACTAACACATCCTGAAGTGGTGGAACCAGAAAGAACTGAAAGAAAACATGAAGTCAGAGCTACAGTTGAAGCGAGACCAGCAGAGACAAATGTTCCACAGACTCAACCAAATACGCCTACTGTTATGATCACAAATAATCAACAAGTTCGCGCGCCCAGCGTAGGCGCAGTGAGCGCGGTGGGCGCGCCGAGCGCGGCGGGCGGCGCGGTGGGCGCCACGTACACGCACGCCGTGGGCGCCACGCACCACGCCGGGGCCACGCTGGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVKRQHTGESPHKCSFCTKSFTRKEHLTNHVVRQHTGESPHRCSYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTYSRKEHLTNHVCSKQFTRKEQLVTHMRSHSCVFLCKGHLVSHRLTHPEVVEPERTERKHEVRATVEARPAETNVPQTQPNTPTVMITNNQQVRAPSVGAVSAVGAPSAAGGAVGATYTHAVGATHHAGATLAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01362568;
90% Identity: iTF_01362568;
80% Identity: iTF_01362568;