Sfru003344.1
Basic Information
- Insect
- Spodoptera frugiperda
- Gene Symbol
- -
- Assembly
- GCA_011064685.1
- Location
- JANIPB010000078.1:221443-230228[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.12 2.2e+02 2.0 0.6 8 22 202 216 201 218 0.95 2 3 7.9 1.4e+04 -3.8 0.0 31 39 222 230 222 231 0.77 3 3 9.5e-09 1.7e-05 24.8 0.1 2 30 248 276 247 277 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCTCAAGTGAAATGCGAGCCACTCTCGGACGAGGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCCAGTCAGAGGAGTTGGCCCCGCTGGCCCCCGCAGGCCCGGCAGCGACACCTGTGTGTGTGAAACAGGAACGAGCGGAGACCCCACCGACCACAACACTAGAGACGCTCGAGTCAGCACCGCACAATGCCAAGGCACGTCATTTGCTGGACCGGCACATGGACTTTATGAACGTGCATGAGGTGCCCGACTCCACGGACTTCATGCCGCTGCTGGCCATCAAGGACGAACCCTCGTCTGAAGGAGAACAACAGCATCTAAGCGGCGATGACAACATTACTCATGTGGTTCGGCAAGCTTCGCCGGCGCCCCGACACAGCCCCAGAGCTGGACGCAGCATGTCATGGATCGTTACGCGCTCAGAAAACCATCAGATTGAGTCTTACAAAGGCATCAGCGACATACGGCATCCCATCGACAACGCTGTGGCAGCGAGCCCACCGGCTGGGCATAGACACCGCCGAAGAAGGAGGGAGCCGCCGAAGTCCTGGAGCGAGGCGGACTTGCGGGGGGGGGCACTGCACGCCCTGAGGGCGGGGGCCATCTCCGCTAACAAGGCCATGCAAGGCTTATGCAGCACCCTGTACAAGATAGCCCGCCGCGAGGGCATCCGCTGTCCGCGCCGTTCAACGCGGCGCCCGACGGCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCTGCGGCGCCTCCTCCGTGCAGCGCGCCGCCTCGCAGTACGGCATACCCACTGGTAAGACCTGGTAG
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSQSEELAPLAPAGPAATPVCVKQERAETPPTTTLETLESAPHNAKARHLLDRHMDFMNVHEVPDSTDFMPLLAIKDEPSSEGEQQHLSGDDNITHVVRQASPAPRHSPRAGRSMSWIVTRSENHQIESYKGISDIRHPIDNAVAASPPAGHRHRRRRREPPKSWSEADLRGGALHALRAGAISANKAMQGLCSTLYKIARREGIRCPRRSTRRPTAWRRADLQLALASIRCGASSVQRAASQYGIPTGKTW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -