Sexi020520.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022057.1:5808472-5818667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.3 1.9e+02 3.2 1.8 1 23 206 228 206 228 0.92 2 16 6.3 5e+02 1.8 0.6 3 14 264 274 263 278 0.75 3 16 1.2 97 4.1 0.2 5 20 289 304 288 306 0.91 4 16 0.14 11 7.1 2.3 1 23 316 339 316 339 0.91 5 16 0.0043 0.34 11.8 2.8 1 20 375 394 375 396 0.95 6 16 5.2 4.1e+02 2.1 4.3 1 23 401 423 401 424 0.78 7 16 0.17 14 6.8 0.7 1 17 659 675 659 681 0.81 8 16 0.36 29 5.7 3.9 3 23 688 708 686 708 0.95 9 16 2.9 2.3e+02 2.9 0.7 1 23 729 750 729 750 0.77 10 16 0.95 76 4.4 3.1 3 23 799 819 798 819 0.95 11 16 0.083 6.6 7.7 0.1 2 23 835 856 834 856 0.96 12 16 5.9e-07 4.7e-05 23.9 2.9 1 23 862 884 862 884 0.98 13 16 0.00015 0.012 16.4 1.1 1 23 889 911 889 911 0.97 14 16 0.002 0.16 12.8 1.4 2 23 918 940 917 940 0.95 15 16 0.11 8.9 7.3 0.2 1 20 947 966 947 968 0.96 16 16 0.0011 0.086 13.7 0.2 3 23 979 1000 978 1000 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAACTTCAAGAAAAAGGTGCAGAAAGTCTAAATTAGTGCCCAGAGAATGTGTTCTGCTTGAAGAAGAAGATTTGGAACAGCAGataccattacaaaaaatattcataccgGTACcggtaaataaaagtaaaacaatcaCACAGAAGGACCAGTCCGATGAATGTGACAAGAGTGtcttgaaaaaaattaatgCTGCCGTCAGAAAATCCTTGGAAGAGCAAGAACTGTGCAAAGATATCAAAGAACCACAAAGAAAATTCGAAGTGGCTATAAAAATTGAAACGTGCGATGAAGAAATGAATCCAGAGCTAAATGTAGAAGATAACAAAACTATAATAAGGCGCCATCTGTCTGATCTAGACGTAGTTCCATTACCTACTATAGAACTTAAGGCCGAAGACATACTAAAAGCAGttgatgatattataaattcttCAAGTAATATTGCAGATAAGGCTTTATGTTTGTATGTGCGGAACACCATTGGGCAATATGTGAGGAAAGTATCAACTCCTAGCCTTCATGAGGTAATGGTTCAGGAAGCTTTAGATCAATGGCAACCTTGGTATCATCACTCCAGATATGTCAATCGCACCCCACCAATATCTTACAAGTGCTACATCTGCAGAAAATCCTGGTGGCACCTTTCAGAGTTTAAAGAGCATATTACGGAGcataaaaatctaaacattGATTTTGAACGAATAAACAACTATGAAAGTGTGTTAATAGCTTCATctgatattgttttaaatatagcaGACATATTTACTGAAGGATTCTGTTCTCTGTGTGGAAAGGATTATGATCACCACAAGTTGCGCAGGGATGTTAACGGTAAATTCCAAGGGAATAGCGTTTGTGGGAAGAAACTTAATAACTGTTATAGCTTGATGTTACATACAGCTAATTGCGAAATTTGTTCCATcggtttgaattttaaatgtgaaGTCTGTTCAGTGAAATTTAATGAGAAAATACATTTGGATGAACATTTGGTTTTGTGTCATACGGTGAGATCGGATGTGCCTATTGGAACTGGTTTCAAGACATGCCAATGCTCAGAGCAGTATGTTTCCAAATACCATCATATTTGTATTGATAAATCCCCAAATTTTCAATGTTCTAATtgtaaacaaagtttttattataaacaacaaaTGAATAGCCATATGTTCAGTCAGGATAAGGAATATACTTGTGAAATATGTAACGAAGCCTGCTACAGGCCCTGTATTAAGTATAaacatttaatgaaacataCGGATCAATTTATGATGGTCAGCAAGTGTAGCAATTGTCCAGGGTTGAACGTATTTGTGGATGAAGAGGATGAACTGTATCATAAACGGATGAAGCATGGCCACGATCTACAGGGTATGAAGAAGCAACACTACTTTCCTAAGTTGCTTGTACCTGTTTCCTGCATCATACACAGTTTAAAATATCGAGCTGATATTATGCCAACCCTGAATATAAAGGAGGAAATACAAGACAGCCATGATTATTCCAGTGATGACTATCAGGCCACTgatataaaaatggaaaatgatTTCGTAGAAGATGAGCCAGAAGATTCAGAAGGACCAGAAGATGAAGATTTTGGTTTAGTTATTAAAGAAGAACCAATAGGTTCAAGAGACACTTCCATGATAGATTATGAAAACTCAGACGAAGAAAATCCAGACGAAGATTATAATggtgatataataaaaatcaacggCAATCATGAAAATGTCGAGGAATATGGTGAAAGAGAAATACAGAAAGATCAAGTGGACGACATCAATGAGAAGTTGTTGCCAGACGATTCTGATAGTGAAACGACAATGGATCCAGTCCTAGTAGACGGAAGAATGAAAAATAGACTTTATTTATGCAAGAAATGCGGATACAGGGCCAGGCATAAGAAGTTCAAGGAACATTTGGAGAGTGAATGTGGGCATTCAACGaacaataaaaagaattataattgTTCTTATTGTGATATAACATTCCCATCTTTGGCCAAATTCATATTCCATTTCACTAACCATGGTTTTAAAGAAATGTGTTGCCCGGTATGTTATAAGCAATACCGATATACTTCTAAATTAGGCCAACATGTACATTCgcatataaaatacaattatgtcCGTATAAAGTTGATTTCTCATGAGCGGCGTTCTAAGTCAGATTTCCAATGTAAACAGTGCAGTGAGATTGTTAGTGTAAATAGCTATTTTGATCATTGGCAAACGCATTTAAGTCATGTGCCTGAAGAGAAGAGTAAGGAATTGAGTCAAGATACCAAAATTGATGAGCTTCCCGTTTCTGTACCTGGATGCATGTCTGAAGAAGATGTTAAGGATTGCTTAAgGCACATAATGATGAAGTTGCCGAAAAATTGCAATTACTGTAAAAGACAATTCCAAAGAGTTTACGGCTGTAAGCGGCACATTATCGAACACTTGCTGACCGATGCATATGCAAAGAAACCCGTTCTTGGTGTGTTGAGATGCCAGATATGTGCAGCCGGGTCCCCCACACCCGAGAAATATAAGCAACATATGCGTGACCACGCGTCTCTGCCCGTGTTTAAGTGTGAATTGTGTGACAGAACATTCAGTGACTCAAGTAATTttactaaacataaaaaagttcacaatttaaaagttttcacTTGTGATCTTTGCAGAAAGAAGTTCCAAGCCAAGTCGTCTTTGATTAAACATATGGCGttgCACCAGGCGATGCACCCGATCACCTGTGAATTTTGCAATCgagttttttatttcgattcCAGTTATCGACGCCACGTTAGGTATTCTCACTCGAAATTCGCTTCAGGATTTCGCTGTGTTATGTGCAATGAGAGATTTGAAAATCTAAAAACGAAATGGAACCATATGTGGGAAGTTCACAAGGAAAGAAAACAGGAAGCGGACTGCCCTATCTGCTTAAAGTCCTTCAGAAAATACTCCGATGTAAAAGTTCACGCTAAATCTGTCCATGGGGTTCATGTGTCCATTGTTAGTATGAAAAATGcctcaaatattaaaattaatgtagaaAAGTGTTTCACTTCTCCCAAAATTAAGGTAGGTAAGCCTGAAACTCTTGTGGTATATGAGTCTGAATGA
- Protein Sequence
- MSETSRKRCRKSKLVPRECVLLEEEDLEQQIPLQKIFIPVPVNKSKTITQKDQSDECDKSVLKKINAAVRKSLEEQELCKDIKEPQRKFEVAIKIETCDEEMNPELNVEDNKTIIRRHLSDLDVVPLPTIELKAEDILKAVDDIINSSSNIADKALCLYVRNTIGQYVRKVSTPSLHEVMVQEALDQWQPWYHHSRYVNRTPPISYKCYICRKSWWHLSEFKEHITEHKNLNIDFERINNYESVLIASSDIVLNIADIFTEGFCSLCGKDYDHHKLRRDVNGKFQGNSVCGKKLNNCYSLMLHTANCEICSIGLNFKCEVCSVKFNEKIHLDEHLVLCHTVRSDVPIGTGFKTCQCSEQYVSKYHHICIDKSPNFQCSNCKQSFYYKQQMNSHMFSQDKEYTCEICNEACYRPCIKYKHLMKHTDQFMMVSKCSNCPGLNVFVDEEDELYHKRMKHGHDLQGMKKQHYFPKLLVPVSCIIHSLKYRADIMPTLNIKEEIQDSHDYSSDDYQATDIKMENDFVEDEPEDSEGPEDEDFGLVIKEEPIGSRDTSMIDYENSDEENPDEDYNGDIIKINGNHENVEEYGEREIQKDQVDDINEKLLPDDSDSETTMDPVLVDGRMKNRLYLCKKCGYRARHKKFKEHLESECGHSTNNKKNYNCSYCDITFPSLAKFIFHFTNHGFKEMCCPVCYKQYRYTSKLGQHVHSHIKYNYVRIKLISHERRSKSDFQCKQCSEIVSVNSYFDHWQTHLSHVPEEKSKELSQDTKIDELPVSVPGCMSEEDVKDCLRHIMMKLPKNCNYCKRQFQRVYGCKRHIIEHLLTDAYAKKPVLGVLRCQICAAGSPTPEKYKQHMRDHASLPVFKCELCDRTFSDSSNFTKHKKVHNLKVFTCDLCRKKFQAKSSLIKHMALHQAMHPITCEFCNRVFYFDSSYRRHVRYSHSKFASGFRCVMCNERFENLKTKWNHMWEVHKERKQEADCPICLKSFRKYSDVKVHAKSVHGVHVSIVSMKNASNIKINVEKCFTSPKIKVGKPETLVVYESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -