Basic Information

Insect: Spodoptera exigua
Gene Symbol: -
Assembly: GCA_011316535.1
Location: CM022072.1:3795131-3796144[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.6 6.8e+02 1.4 2.0 9 21 53 65 43 66 0.83

2 9 0.0048 0.39 11.6 3.5 2 23 79 100 78 100 0.96

3 9 0.003 0.24 12.3 0.5 2 23 112 133 111 133 0.88

4 9 3.1 2.5e+02 2.8 0.0 2 23 149 169 148 169 0.79

5 9 7e-05 0.0056 17.4 3.8 2 23 177 198 176 198 0.92

6 9 0.017 1.3 9.9 1.6 1 23 204 226 204 226 0.98

7 9 2.4e-07 1.9e-05 25.2 1.2 1 23 232 254 232 254 0.99

8 9 0.00048 0.038 14.8 5.2 1 20 260 279 260 283 0.94

9 9 3.8e-06 0.0003 21.4 1.8 1 23 289 312 289 312 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.6	6.8e+02	1.4	2.0	9	21	53	65	43	66	0.83
2	9	0.0048	0.39	11.6	3.5	2	23	79	100	78	100	0.96
3	9	0.003	0.24	12.3	0.5	2	23	112	133	111	133	0.88
4	9	3.1	2.5e+02	2.8	0.0	2	23	149	169	148	169	0.79
5	9	7e-05	0.0056	17.4	3.8	2	23	177	198	176	198	0.92
6	9	0.017	1.3	9.9	1.6	1	23	204	226	204	226	0.98
7	9	2.4e-07	1.9e-05	25.2	1.2	1	23	232	254	232	254	0.99
8	9	0.00048	0.038	14.8	5.2	1	20	260	279	260	283	0.94
9	9	3.8e-06	0.0003	21.4	1.8	1	23	289	312	289	312	0.96

Sequence Information

Coding Sequence: ATGATAATGATCATTGTTTCTGATAAAGATAAAccaaaattagaaaaaaagggAGAACAGATTGATGTAGATGATGGCCCAGAGTCTGAGCTGAGTGAACAACCAACACAAAAAGGAAATCCAAAAGAGTGTGAAGTTTGCCTTGAGATGGTTCCTCATTTCAAATATGAAGATCATTTACAAGAACACCGGAAAAAGTATGTAGACACTTGTAATAAAAGAAATGCCAAAGTGGAATGTAAACACTGCGGCAAGTGTGTGAGCAAGACGTATATCAAACTGCACATGAGAATACTACATGGCACTCCTGAGGAACAAGCAGAGCGTCAAATTAAATGTGAATTATGTGATCGAAGCTTTAACCGTAATTACTATGCTGATCATGTGAAGAGAGTGCATGGCAGcaccaataaaaatatagatcaGAAACAATCGAAATGTATTGAATGTCCTGTGTGTTacaaagaaattaaagaaagtaaatatgAGGCACATGTAGCATGGCATGGTGGACGtttaaagcaattaatttgTGATAAATGTGGGAAAGTGTTTAAGCATCCGTCCGCTTTCAAAACTCACTGCCTTACCCATGGtagtgaattaaaatataaatgtcaatTCTGCCCCTACAGGGGGTTGCATCAGGCATTACTAAAAATTCATGTGAGAACACACACCGGAGACTATAATTACAAATGTACAGAATGTCCAGCTCGATTTATAACTAAAAGCAACTTGTCTAAACATCTTCAGAGGCACAAAGCTCCgagtaattttaaatgtgaagTTTGCGGTAGATGTTTCTACTCTAAAAGAGATCTTGATAAACATGCTAAATGTGTACATATGTCGTTAAAAACTCATGTTTGTGACATTTGTGGTAAAGGGTTTGGACATAGAGACAATTTGTTAAGTCACCAGTTAAAGacacataaaaaagataagACTGGACGCAAAGGCCGCATGCCTTCCTATCTGAAAGTAGACTTACAGAATGTTGAACAATGCTGA
Protein Sequence: MIMIIVSDKDKPKLEKKGEQIDVDDGPESELSEQPTQKGNPKECEVCLEMVPHFKYEDHLQEHRKKYVDTCNKRNAKVECKHCGKCVSKTYIKLHMRILHGTPEEQAERQIKCELCDRSFNRNYYADHVKRVHGSTNKNIDQKQSKCIECPVCYKEIKESKYEAHVAWHGGRLKQLICDKCGKVFKHPSAFKTHCLTHGSELKYKCQFCPYRGLHQALLKIHVRTHTGDYNYKCTECPARFITKSNLSKHLQRHKAPSNFKCEVCGRCFYSKRDLDKHAKCVHMSLKTHVCDICGKGFGHRDNLLSHQLKTHKKDKTGRKGRMPSYLKVDLQNVEQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -