Sexi020398.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022057.1:2980165-2993131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.91 10.4 1.8 1 23 209 231 209 231 0.98 2 12 0.042 3.3 8.7 0.4 2 23 239 261 239 261 0.96 3 12 0.92 73 4.5 1.3 1 23 265 287 265 287 0.96 4 12 0.015 1.2 10.1 4.0 1 23 292 314 292 315 0.94 5 12 2.7 2.2e+02 3.0 2.8 3 23 321 342 320 342 0.83 6 12 0.039 3.1 8.8 1.2 2 20 356 374 355 376 0.93 7 12 0.00011 0.0091 16.7 0.2 2 23 388 409 387 409 0.96 8 12 0.00046 0.037 14.8 1.7 2 23 414 436 413 436 0.96 9 12 0.0029 0.23 12.3 1.4 2 23 456 477 455 477 0.96 10 12 7.9e-05 0.0063 17.3 2.3 1 23 483 505 483 505 0.99 11 12 1.5e-05 0.0012 19.5 0.9 1 23 511 533 511 533 0.94 12 12 6.7e-05 0.0054 17.5 2.9 1 23 539 562 539 562 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAGTTACTTGCGTGCCGAGTGTGCCTTGCaactaatataaaactttacgacatatataaatataaactgaaATATGTTTACGAAATAATCAGTGGCATTGagATATCTCCAGGGGACAACTATCCAcattatttatgtgtatattgtAGATCATTACTGTTGAAATGTTTTTCATTCAGGGAGAGATGTATAAAGTCACAGGATCTCATGAAATGTGCTGAACGGGATGGTGAAGttTTAACAACGAAAAAACTCGAATCTTTAGCCGCTTATAACCAAATAATGTTACcatattctatattcaaaataaaaacaacagacATATTTGATATAGACATAAAAAAGGAAACAGACCTAACGTTGAAAGAAGAAATAGACTACAGTGACGAGGAACCTTTAGccaataaagtaaaaaagaataaaaaagataGTTCTGTTGTAAATGAAATTGAAGCTAATTGCGATGATGATAGGAGTGATTTTGACTTACAATTGGATACACAGGACAGTAAAAATGATGTATCCGACTTTGATATTGAGTTAAAATGTCTCACTAAAGAGGAGCAATATAACGAATTATTAGCAAGAAAATCATCACAGAattatataaattcattttacaaatGCGAACTGTGTTTCAAAGGATTCCTTCAGGATGAgacttataaaaaacatatgatCCGACATGATCCGTCATCGGGCGATGAAACCTGCGATGTCTGCAAAACAAGATGGCCGAACAAAAGAGCATTGAAATCCCACATAACAACAGCTCACGAAaggaaatatatatgtaaactATGTAATTTAGAAATCAAGAGCAGTCATCGAGCAAAAGAACATCTAAAATGGCATAGTGGTCATAGATTCATCTGTAAAATATGTGGCTTAACCTTTTCAAAGTCAACGAGCCACTTAACTCATGTTAGGTTACACCATCCGTCGAAAAATTGTTGTGGAATATGCGGAGAGAGTTTTCTTAGTGAAGTCGGATTGAggatgcattgtaaaaagtcacatcgggAGGTCGAGgtTTCTGTAGTAACAAGAGCGAAGAtagtgtgttgtgtatgtgacaCCCACTTCAAGACTGTGGAAGCTATGAAGCGGCACGTTGCTCATACTAGTGACGGCGTGTGTGACGCCAAGTACAGTTCATGCTACCAGTGTGGGGAAACCTATCCGACGCAGGTTGCGTTGAAGGAACACTTAAAGTCGCATGACAGCGGCGTCAAATGTGAAGAGTGCGACAGACAATTCGCTCATAGCCGGTCCTTCTCAATCCACTATCAACGTGTCCATCTGGGAATCAAATTGCAACCGTACAAGCCGCGGGAACGTCGGGCCCATGTAGATTGGGTCTGTGAGGTGTGCGggaaaaaatgtattTCCAACGCTTCGCTGGTTTGTCATCAGCGAATCCATACGGGGGAGAAGCCTTATCAGTGCAGGGATTGTCCAAAGCGGTTCAGCATATTCCAAAGGttaaaaATCCATCAACGCACCCATACTGGAGAAAGACCTTTCAAATGTGCAGTATGCCCGAAGGCGTTCAAACACAAAGCTGCCTTAAACAGACATGATAGGgtACATTCAGGAGCGAAGCCCTATCAGTGTATACATTGTGGAAAAACGTTTTCCCAGTCGAATTCTCGTAAACTTCACATAAGGACGGTACACCTGAAGCTGCCTACCCCCTACAGAAGCAGTCGGTATAGGACTGAAGATACAGACGTACTAGAAAATAATGGCCTAAAGTTACCAGGTTAA
- Protein Sequence
- MEELLACRVCLATNIKLYDIYKYKLKYVYEIISGIEISPGDNYPHYLCVYCRSLLLKCFSFRERCIKSQDLMKCAERDGEVLTTKKLESLAAYNQIMLPYSIFKIKTTDIFDIDIKKETDLTLKEEIDYSDEEPLANKVKKNKKDSSVVNEIEANCDDDRSDFDLQLDTQDSKNDVSDFDIELKCLTKEEQYNELLARKSSQNYINSFYKCELCFKGFLQDETYKKHMIRHDPSSGDETCDVCKTRWPNKRALKSHITTAHERKYICKLCNLEIKSSHRAKEHLKWHSGHRFICKICGLTFSKSTSHLTHVRLHHPSKNCCGICGESFLSEVGLRMHCKKSHREVEVSVVTRAKIVCCVCDTHFKTVEAMKRHVAHTSDGVCDAKYSSCYQCGETYPTQVALKEHLKSHDSGVKCEECDRQFAHSRSFSIHYQRVHLGIKLQPYKPRERRAHVDWVCEVCGKKCISNASLVCHQRIHTGEKPYQCRDCPKRFSIFQRLKIHQRTHTGERPFKCAVCPKAFKHKAALNRHDRVHSGAKPYQCIHCGKTFSQSNSRKLHIRTVHLKLPTPYRSSRYRTEDTDVLENNGLKLPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363411;
- 90% Identity
- -
- 80% Identity
- -