Sexi021055.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022070.1:5235469-5260596[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 9.5 7.2 0.1 2 23 274 296 273 296 0.94 2 12 0.21 17 6.5 0.1 2 23 320 342 319 342 0.95 3 12 9.3e-05 0.0074 17.0 0.5 2 23 366 387 365 387 0.97 4 12 0.069 5.5 8.0 0.5 1 21 391 411 391 412 0.91 5 12 0.41 33 5.5 0.1 1 23 453 476 453 476 0.95 6 12 0.13 10 7.1 0.1 2 23 502 524 501 524 0.95 7 12 0.0033 0.26 12.2 0.3 2 23 548 569 547 569 0.94 8 12 1.1e-05 0.00089 19.9 0.0 1 23 573 596 573 596 0.97 9 12 0.0087 0.69 10.8 0.6 1 23 600 623 600 623 0.97 10 12 1.7 1.4e+02 3.6 0.6 1 23 628 653 628 653 0.88 11 12 0.057 4.5 8.3 5.7 1 22 662 683 662 685 0.88 12 12 0.00067 0.053 14.3 0.1 1 23 695 718 695 718 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAAAAACTACGGATTGGAGAGCCGGTCCGAATGTTTGTCGTTGTTGTTTGGCGGAAGGGTGCTATAAAGATATTTCTACGGAATATTTTTGGATGGGAAAGCGCGAAGTATACGCTGAAATGCTTTCCGAGACCCTTAATCTAAGCATTGCCTACTCAAATACTGGAGGCCCGAATAGTAATAGCCGTCTTATATGTGAGCTCTGCATATCGAGGTTACGGGATGCCTCTGACTTCAAGCGGCAGGTTCAAGAGTGTGAGAGGACATTCCTGCAACATTTGAATCCATGCAGCTCTTCGATGGTCGGTGATGTTGAAGTGACTGTGGAACCGACGGAAACGGAATCTGACGTGAAATTGGAACGCGTGAAACAGGAGAAGCAGATaagcgatgatgatgatgacttcgATGAGCGATGCGGGTtcgatgaagatgatgatgatgatgatcTTGACGATCAACCCCTAACAAGATTGGCAAGCAGGATACCTAAAAAGGAATCGGTAGACCTTTTAGACCTACTCGATAATACTAAAGCGACTGAAAAACGGAAATCGTCAACGAAAACAAAGGCAGTGCCCGCGAAAAAGGCCAAAAGTATGAAGAAAGATGTCAAAGCTACATCTAGCAAGCAACCAGCGAAGActgagaagaagaaaaaagggTCCACAAAGGATATTGACGGACTTGAAAGTAAACCAAAACAAAGATTGTTCGAACGGTCCGTGGGCCAGAATCCGCAAAGGCAGAACGCTGTTCTAGTGCTTAAGCACTCGACAGCTTTTCCTTTTAAGACCCGTTTCAATAGGATCGTCTGTTCCTACTGCCATGATGAATTTGAGCCAATGGCCGCGTTGAGGGAACATATGAAAGCCGAACATTCCACTGCTGACTACAATAGCGCTTTCTATAAAGTCTACGATGCCCTTAAAGTAGAAATAACAGATTTAAAGTGTACCATGTGTTCACAGGACATTCCTGATATAGACAATTTTATGTCCCACATTTCGCGAGATcacaaaattaaagttaattttgaTGTACCTTTCGGAGTTCTTCCATATAGACAGGGACCTTCTGGAAGGTGGACGTGCCTCGAATGCGATAAAACATTCCCTAAATTCTCGCAAATAAATGTACATTTAAGGAGTCATATGAAAATTTTCACTTGCGACAAATGTGGTGCTACTTTTCTATCCGATCATGGCTTAAGACAACACGAGCGTAATTTCAAATGCTACAAATCCTCTTACAATCCTCGTTTCGGAAAagccttaaaatataaaagtaatactgAAATTATTCTGGAATGTTCCACCGCTTGTCCGTTCAGAACTTGGGGCCAGAATTTCAATTGTGTCTTTTGCCGCGTCCAATCAAATGACCCTATAGGTTTAAGAGCCCACATGGCTTCTCGGCACGCCAATTTTGACATACAACTAGTCTTTAGCAGAAAAATAcggaaagaatttttgaaagtGGACATAACAGACTTGCAGTGTAAACTTTGCTTCATACCGATTGATACTTTAGATGACCTAATGACCCATCTTAAGAACGATCACAAACAACCGTTGAATGCAGACGTTCAACCGGGCGTCCTCCCATTCAAACTTAACGACGGATCGAACTGGAAATGTGCGATATGCAAAATACAGTTCTCCGACTTTATAtccttaaaaaaacacacaGCAGAACATTATCAGAACTATGTATGTGACACTTGTGGCGAAGGCTTTATAACGGAATCAGCTCTGAAAGCCCACACTAAAATACCGCACGATAACAAATATAATTGCAGTCGTTGCGTAGCCACATTCACAACTTTAGAAGAAAGAAATATTCACATCAAAACACAGCATACATCTTTACCCTACATGTGCGTTTACTGCAAAGAGAAACCGAGATTTGCAACATGGGAATTGAGAAAAAGACATCTAATGGAGTTCCATAACTACAAGCCTGGAGCTGAAATGTATGAATGCACGACTTGCCATATGACTTTTAAAACTCGGTCGCAAAAGTACCATCATAATGTGAAAGCTCATAGGACGAAGAAGGAGGCAGAGTATAGTTATCCCTGTGCCAATTGTCCTAGAGCGTTTGCTTCTAAACTGTCCCTCGATAAACATATCGCGAAAAAACACTTTCATGTATGA
- Protein Sequence
- MDPKTTDWRAGPNVCRCCLAEGCYKDISTEYFWMGKREVYAEMLSETLNLSIAYSNTGGPNSNSRLICELCISRLRDASDFKRQVQECERTFLQHLNPCSSSMVGDVEVTVEPTETESDVKLERVKQEKQISDDDDDFDERCGFDEDDDDDDLDDQPLTRLASRIPKKESVDLLDLLDNTKATEKRKSSTKTKAVPAKKAKSMKKDVKATSSKQPAKTEKKKKGSTKDIDGLESKPKQRLFERSVGQNPQRQNAVLVLKHSTAFPFKTRFNRIVCSYCHDEFEPMAALREHMKAEHSTADYNSAFYKVYDALKVEITDLKCTMCSQDIPDIDNFMSHISRDHKIKVNFDVPFGVLPYRQGPSGRWTCLECDKTFPKFSQINVHLRSHMKIFTCDKCGATFLSDHGLRQHERNFKCYKSSYNPRFGKALKYKSNTEIILECSTACPFRTWGQNFNCVFCRVQSNDPIGLRAHMASRHANFDIQLVFSRKIRKEFLKVDITDLQCKLCFIPIDTLDDLMTHLKNDHKQPLNADVQPGVLPFKLNDGSNWKCAICKIQFSDFISLKKHTAEHYQNYVCDTCGEGFITESALKAHTKIPHDNKYNCSRCVATFTTLEERNIHIKTQHTSLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGAEMYECTTCHMTFKTRSQKYHHNVKAHRTKKEAEYSYPCANCPRAFASKLSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01488026;
- 90% Identity
- -
- 80% Identity
- -