Sexi000971.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022064.1:797988-802124[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00012 0.0093 16.7 0.9 1 23 301 324 301 324 0.92 2 11 0.0067 0.53 11.2 3.2 1 23 338 360 338 360 0.93 3 11 2.1e-05 0.0017 19.1 3.7 2 23 366 387 365 387 0.97 4 11 3.3e-06 0.00026 21.6 0.9 1 23 391 414 391 414 0.97 5 11 0.71 56 4.8 3.2 1 23 417 439 417 439 0.95 6 11 0.00076 0.06 14.2 0.4 2 23 522 543 521 543 0.96 7 11 0.048 3.8 8.5 0.3 2 23 563 585 562 585 0.96 8 11 8.4e-07 6.7e-05 23.5 4.1 1 23 591 613 591 613 0.98 9 11 0.00045 0.036 14.9 2.5 1 23 618 640 618 640 0.98 10 11 0.00056 0.044 14.6 4.0 2 21 647 666 646 669 0.95 11 11 0.27 21 6.2 2.0 3 19 709 725 708 730 0.95
Sequence Information
- Coding Sequence
- atggAAGGCGAAGAGTGTAACATTAATGTGGAGGCGCCATATCCAATATTGTTCATACCAAAAGTGTGTACGCAGTTGGAAACGCATTGCCAAGTTTCGGAAAACGTGTTCATACACCTGAACATCTCATGCCCGGACACTTTCGGTAACGAAACAGTTATATACCAGGGCTTCTGCAATGTGAAAGTTTTGGATGGCAATGATATTAACATCAGGTATGGATCACCAGATAGTTTGACAAGCAGTGACAACATACCTCTGATTCTGACTGAAGCAAACCAAATAGCATTTCCTGCATACAATGATTCCCAAGTGTGGATAGACCCAACGAGGAGTCCGTATGTATACAACCGTTGTGACTCACCACCTCAGGAGTCCTACACTATACGTGAGGCTCCCAACAACCACATAACTATTGAGCAGCACAACACATATATTACACAGAATGTGTACCAATACAATGAAGCTATTCGTTACTCTTCGGTCTGCGAGGAGCAGAAAGCAGTAGAGAAGATACAGGAAAACACTCAGAATCCTAATGGATACAATATGTATGAGGAAGATGAGTTTGAGTGTGGAGTTTTTCTATCTCAATTGTCTGAAGAAATTATCCATGAGAAGGAAACTAGAGCTAGAGATGAGAGGAAGTTTATTGGGTTGCAAACGGACAATGAAGCGCTGAAACAGCTGATGTCTTCAGACATACAATCCGTGTCAAGACAGCAGAAGACTATACTGTTCTTGGGTCATGACTCTGAGTCTGGTCAGACGGTACAAAATATTGCTATCAATGATCCTTCGTTGGAGTGCCGGGGTGCTAGAGCAATGGAGACTGAAGTCACTATTGAACCTGTTCCCGAAGAGTCGACCTCTAACGAAAAAAACCCACGCGCGAAGAAGTATCAGTGCAACAAATGTAAACAGATATTTGATCAACTATCCGCCTTCAAACAACACATGGTCGGCAGCCACCGGTTCCCAAACTTATACGACGTCTCCACCAACGTCAAGTTCATGTGCACCGACTGCGGCAAAAATCTAAAAAACCAAGAGAAGTTTGAGCAACACTGCCGCGGTCACGGCGACCCCGATCTGGAATGCAATAAGTGCCACAAAGTGTTCGCTTCAAAATTCACTTTACGCAACCATCGCAAAATACATTCTCGGATGTACCCATGCAACTACTGCACTAAATCGTATTCAACATCGCAGGAGTTGCAATCACACATAACGAAAGCACATTTTTCCTTTATGTGTGAATGTTGTTCTTTTACTTGCGAGAATTTTGATGATCTTACAGCTCACCAGGAGATTCATAAACAAGATTCACATTCACAAATCAATACTTCAAAGAACTCCAGTGAATCCGACTTCGCTGAGACAGGAGGCCTGTTTGAAGAGATCAGTGACTTCTCTGTGACAGAAGACATGGTGAAACGGGAACAGGATGAACGATTCCAAACTGCTGACTCGGTAATCGCTAAAGTGATGTCTAATAAGATATTCCGAAGCAATTCTACGAGTGGTAATAGTAAAAACAAGAAACAGCGGAAGTACAATAagACCTGCGAAGTATGTTTGAAAAAGTTCGATCGGATCGGTGACCTCAAGAGACACCTGATCGAGCACGTAATAAGGAGCACCCTCGCGAAGAATCCAGTCAACAAGTTCGGGGTTCTGAACATCCGCTGCGAGATCTGCCAGGAGAAGGTATTCTCTAAAATAGACAGATATAAGGCTCATCTTAGAGAGCATGCCAAGCTCACCCTTTACAAATGTACCTTCTGCGATAAATCCTTCAGTGATTCCAGTAACTTCTCTAAACACAAGAAAATCCACGGTACCACGTACTTCCAGTGTGACTTGTGTCAACGCAAGTTTAATTCGAAGAAAATGATCACTCAACACATGGAGtatcataacaaaacaaacccTATTCAATGTCAGTACTGCGACAAAGTGTTCCATTTTGAATCCATGCTTAATAAGCATATAAGGTGCTCGCACACCAAGATGTCGACCACCAAATTCAGGTGTAGGTTCTGccgcaattattttaaaagtttgaagGAGAAATGGGATCATGAGTGGACGGTGCATAATGTTAGAAAGGCGATCGTGGATTGTCTGTTATGTGGTTCTAGATTCAGGAAGTACGCTGAACTGAAAAGACATTGCACAGATGAGCATGATACCGCTATTCCTCAAGCGAAACGTCTGCTTAGATGGAAAATGAAACGAAAGATGCAGTTTATTGACGATAATTCGTAA
- Protein Sequence
- MEGEECNINVEAPYPILFIPKVCTQLETHCQVSENVFIHLNISCPDTFGNETVIYQGFCNVKVLDGNDINIRYGSPDSLTSSDNIPLILTEANQIAFPAYNDSQVWIDPTRSPYVYNRCDSPPQESYTIREAPNNHITIEQHNTYITQNVYQYNEAIRYSSVCEEQKAVEKIQENTQNPNGYNMYEEDEFECGVFLSQLSEEIIHEKETRARDERKFIGLQTDNEALKQLMSSDIQSVSRQQKTILFLGHDSESGQTVQNIAINDPSLECRGARAMETEVTIEPVPEESTSNEKNPRAKKYQCNKCKQIFDQLSAFKQHMVGSHRFPNLYDVSTNVKFMCTDCGKNLKNQEKFEQHCRGHGDPDLECNKCHKVFASKFTLRNHRKIHSRMYPCNYCTKSYSTSQELQSHITKAHFSFMCECCSFTCENFDDLTAHQEIHKQDSHSQINTSKNSSESDFAETGGLFEEISDFSVTEDMVKREQDERFQTADSVIAKVMSNKIFRSNSTSGNSKNKKQRKYNKTCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQEKVFSKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDLCQRKFNSKKMITQHMEYHNKTNPIQCQYCDKVFHFESMLNKHIRCSHTKMSTTKFRCRFCRNYFKSLKEKWDHEWTVHNVRKAIVDCLLCGSRFRKYAELKRHCTDEHDTAIPQAKRLLRWKMKRKMQFIDDNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -