Sexi013127.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022076.1:7708894-7729098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.7e-05 0.0045 17.7 3.0 1 23 182 205 182 205 0.97 2 13 4.1e-05 0.0033 18.1 1.8 1 23 209 231 209 231 0.98 3 13 2.1 1.7e+02 3.3 0.2 2 10 239 247 239 259 0.78 4 13 0.00089 0.071 13.9 0.7 1 21 265 285 265 290 0.95 5 13 0.00013 0.01 16.6 1.4 1 23 298 321 298 321 0.96 6 13 1 83 4.3 0.7 1 9 327 335 327 335 0.91 7 13 5.7e-05 0.0045 17.7 3.0 1 23 558 581 558 581 0.97 8 13 4.1e-05 0.0033 18.1 1.8 1 23 585 607 585 607 0.98 9 13 3.7 2.9e+02 2.6 0.2 2 9 615 622 615 635 0.81 10 13 0.00089 0.071 13.9 0.7 1 21 641 661 641 666 0.95 11 13 0.00013 0.01 16.6 1.4 1 23 674 697 674 697 0.96 12 13 0.0011 0.088 13.6 2.4 1 23 703 726 703 726 0.97 13 13 0.18 14 6.7 0.3 2 13 737 748 736 750 0.85
Sequence Information
- Coding Sequence
- ATGGATACAgcgaattttataaatttaacagAAGATTTCGTCGACTGCGGCATAACTACAGAGCTAGTCATCAAAAATgaatttgatgatgatgatattccATTATCAGAACTCAACAACTGGCCAGACCATGATTACATTACTCCAGTGACGATCATAGATTGTAAAGATAAACTTTCCAATGTTTCACAGACCACAGACAATGATGAACTGTCAAAAACCATAAACAATGATGATCtgtcaaaaagtaaaaatttgttGCTAGAtgcaaaaatgaagaaaaaacttCTAAAGAAAGGTTTTTCCTTAGTTTCTGTTGATGATTGTGAGTTGCAGAAGATGAGAAGTGAATGTAGATTGGACGCTGAATTTTTAGCGGCTAGTTTTAAATGTGACAGCTGTATTGTAATTTTTGGCAGCGAAATAGAATTGAAtgaacataatttattacactTAGAGAGTAACTTGAAGTCAAATAAAGAAGCAACGAAAGAAGACTCAATAACTACAacgacaaaattaaaacacgATTCCGCCTTACAATACAAATGTAGTGAATGTGACAAAAGTTTCGGaaataaaagtGCGCGATGGAAGCATGTTCAAAGATGTCATAGGGAGGGATTCAAATGCGCGACTTGCGGCCAACAGTTCCCGTtcaaaaataatcttagaaggCACGAGCAGCGTCACAAATCTCCACCACCTCGCGAGGAATGTCCCATTTGTCACAAGATGGTCAGAGTAGCGTTCAGAGCGAACCATGCGAAAATACACACGGAACGACCAAAGTACAGATGTGAACAATGCGACAAAACCTTGGTCAGCCGAGAATCCTACGAGAACCACTTAAAATATTCCACGGCACATGCGAAAGTGGATTTGTTGAAatACAAATGTACCATGTGTGAGAAGGGCTACAGATCTCGCAATGAACTTAAGGATCATGTCAACTACCAACATATGGGGAAAACGCAGCATAAGTGTCCAATCTGTGATAAGGTAAAAGCAATAAGTTTAACTCGCCTTACCAGTCAAAAACTCAATGAAATAACGGTCACATCGAAATGTATGGATACAgcgaattttataaatttaacagAAGATTTCGTCGACTGCGGCATAACTACAGAGCTAGTCATCAAAAATgaatttgatgatgatgatattccATTATCAGAACTCAACAACTGGCCAGACCATGATTACATTACTCCAGTGACGATCATAGATTGTAAAGATAAACTTTCCAATGTTTCACAGACCACAGACAATGATGAACTGTCAAAAACCATAGACAATGGTGAACTGTCAACAACCATAGACTATAAGGATGAACTGTCAAAAACCATAAACAATGATGATCtgtcaaaaagtaaaaatttgttGCTAGAtgcaaaaatgaagaaaaaacttCTAAAGAAAGGTTTTTCCTTAGTTTCTGTTGATGATTGTGAGTTGCAGAAGATGAGAAGTGAATGTAGATTGGACGCTGAATTTTTAGCGGCTAGTTTTAAATGTGACAGCTGTATTGTAATTTTTGGCAGCGAAATAGAATTGAAtgaacataatttattacactTAGAGAGTAACTTGAAGTCAAATAAAGAAGCAACGAAAGAAGACTCAATAACTACAacgacaaaattaaaacacgATTCCGCCTTACAATACAAATGTAGTGAATGTGACAAAAGTTTCGGaaataaaagtGCTCGATGGAAGCATGTTCAAAGATGTCATAGGGAGGGATTCAAATGCGCGACTTGCGGCCAACAGTTCCCTTtcaaaaataatcttagaaggCACGAGCAGCGTCACAAATCTCCACCACCTCGCGAGGAATGTCCCATTTGTCACAAGATGATCAGAGTAGCGTTCAGAGCGAACCATGCGAAAATACACACGGAACGACCAAAGTACAGATGTGAACAATGCGACAAGACATTGGTCAGCCGAGAATCCTACGAGAACCACTTGAAATATTCCACGGCACATGCGAAAGGGGATTTGTTGAAATACAAATGTACCATGTGTGAGAAGGGCTACAGATCTCGCAATGAACTTAAGGATCATGTCAACTACCAACATATGGGGAAAACGCAGCATAAGTGTCCAATCTGTGATAAGGCCCTAGCTACTAGGCGTTGTATAACGCGACACGTAAAACGCGCTCACGAAGGTATCAAGGAGAATGTTCGAGACAAAATGTGCCAGACTTGCGGGAAGGCTTTCACGTCAGTTAGCAGTCACGTGACACTTGACCGATTTCTGCACGTATATTGGCTGGCAAACCCGTATTATGACCGCCAAACTGAAATTTCTTAG
- Protein Sequence
- MDTANFINLTEDFVDCGITTELVIKNEFDDDDIPLSELNNWPDHDYITPVTIIDCKDKLSNVSQTTDNDELSKTINNDDLSKSKNLLLDAKMKKKLLKKGFSLVSVDDCELQKMRSECRLDAEFLAASFKCDSCIVIFGSEIELNEHNLLHLESNLKSNKEATKEDSITTTTKLKHDSALQYKCSECDKSFGNKSARWKHVQRCHREGFKCATCGQQFPFKNNLRRHEQRHKSPPPREECPICHKMVRVAFRANHAKIHTERPKYRCEQCDKTLVSRESYENHLKYSTAHAKVDLLKYKCTMCEKGYRSRNELKDHVNYQHMGKTQHKCPICDKVKAISLTRLTSQKLNEITVTSKCMDTANFINLTEDFVDCGITTELVIKNEFDDDDIPLSELNNWPDHDYITPVTIIDCKDKLSNVSQTTDNDELSKTIDNGELSTTIDYKDELSKTINNDDLSKSKNLLLDAKMKKKLLKKGFSLVSVDDCELQKMRSECRLDAEFLAASFKCDSCIVIFGSEIELNEHNLLHLESNLKSNKEATKEDSITTTTKLKHDSALQYKCSECDKSFGNKSARWKHVQRCHREGFKCATCGQQFPFKNNLRRHEQRHKSPPPREECPICHKMIRVAFRANHAKIHTERPKYRCEQCDKTLVSRESYENHLKYSTAHAKGDLLKYKCTMCEKGYRSRNELKDHVNYQHMGKTQHKCPICDKALATRRCITRHVKRAHEGIKENVRDKMCQTCGKAFTSVSSHVTLDRFLHVYWLANPYYDRQTEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -