Sexi011754.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022047.1:1354327-1365949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.01 0.81 10.6 5.9 1 23 984 1006 984 1006 0.98 2 11 0.00015 0.012 16.3 1.1 1 23 1012 1034 1012 1034 0.98 3 11 0.00015 0.012 16.4 1.7 1 23 1040 1063 1040 1063 0.96 4 11 0.07 5.6 8.0 3.2 1 21 1069 1089 1069 1091 0.95 5 11 0.00022 0.018 15.8 2.7 1 23 1097 1119 1097 1119 0.99 6 11 3e-05 0.0024 18.6 5.3 1 23 1125 1147 1125 1147 0.98 7 11 0.0069 0.55 11.2 0.9 1 23 1155 1178 1155 1178 0.97 8 11 0.037 2.9 8.8 4.3 2 23 1185 1206 1184 1206 0.96 9 11 8.1e-05 0.0064 17.2 2.1 1 23 1212 1234 1212 1234 0.98 10 11 4.1e-05 0.0032 18.2 1.7 1 23 1240 1263 1240 1263 0.93 11 11 2.5e-05 0.002 18.8 4.5 1 23 1277 1299 1277 1299 0.97
Sequence Information
- Coding Sequence
- ATGCTCCTTGTTTTAGTCTGGCCTGAGGGCCTGGTTTGCGAAATAAAGATAGAAcctaaaaagaaagaagaaaatcaAGCCAGCCTTATCGGTCAGGTAAACCCTAATAATTTCGGATACATACACCTATTTCCATCCTCTGCCCTTAGAGGCGAGGGTGCGACTATTCAGGTGCATCCGGCGAGCCGGGAAAGCTTGGTATGTCCAGGCAGTGTGGCAGGTCAGGTGACACCAAACTACCGAAAGAACTTTACTACTAGGTCATACTTTATTGGCCCTCATAGGAAGATCATCACAGATCCAGACCCATGGTACATAAGACGTCCCAGAACGAAGCCTGTTATTAAAATACACCAAAATATTGTAATAGCACCAGCCCGCGTAGTGGATCAAAAGGCACCGCCCAGTAAGGAGAGACTGGCTAGTCAATATTCCACGAATGAAGGAAACTTCAATCAAGATGATCATGAAAATTTGATACAAGATTGTCGCCAGTCAAAGCAATATTTGTCAAACATTAATATACAAGAAAATAATCAGCAGCAGGCTATTATTAAAGACGGTAACGGAAATCTGATTAACCAAAGTCCTAAAGATAAACAGGACCTTAACCAGAAGTTTCTTGAACGTTGCGATTTTGCGAACCAAGACAATGTCAACCAATATTATCGGGAGAGCCTGATACAAAAGCAACCGGTTCGCCAAGATTCTGCGAACCAACAAAACAACAGACGAGACAACCAAGGTGATTTGATACAAAAGTATTTGGTTCGCCAGGCTTCTGCGAACCAAACTAACGTTAATCAAGGAAACCAAGAGAGTCCGATACAAAAGCATCTGGTTTGCCAAGATCCTTTGAACCAAAATAACGTCGACCACGATATAAACAAATACCTGATTCGTCACGATTCTGCGAGTAAACGTAAACTTGGGCAAGATATCCAAGAAAACTTGTTGACAAAATCTACAAAAGACGTCGGACAGGAGGATCTGTTTGATAAGCAACTAATTCGCTACGATTCTGCAAAAAAAACTTACGAAGGACAAGAAGACTCACTGGGCCAGTACTCAGTACAGGGAGACAttgtaaagaaacaaaaaattggACAGAAGAACTCTGTTAACAACTGCCTGATTCGTCACGATTCTGCTAAGAAAGATAACTCCAGACCAGAGGACATATTAAATAAGCCCTTGGTGCAGCATGATTCTGACGAGCAAAATAGTGTTGGTTACGAGAACCTGTTAGACAAGTTCTTGATTCGTCGTTCGTCTCTGGATAACATTGACCAGGAAAACGCACTACGCAAGCTCCGGGCTGATCACCATTCCACTAAGAAACATAACATTGACCAAAAGAGTCTGGTGAACCAGTACGTGGCACAACACGACTTTGCGAAGAACGATAACTTCGGACAAAAGGAACTGTTAGACAAGTATTTGTTCCATTACAGTTCTGCTAAGAAAGACAAACCCGTAAGGGAAGAGATAATAGACAAGTATTTGGATTGTCACGTTACTCGGAGGACGGGAAACAACGAGACTATAACAAACGAATTTGTGGCTCCTCCTGATTCGGTAAAGAAAGATAACGACGATCAAAGGGACTCAATAGACAGGTACCTCGTTCTTCACGATTCTGGGAAGAAAGATAACTTCAAACAACAGAGCACAATAAACGAGATCGTGTCACATCACGAATCTGGAAAGAAAAATTACGCGGGACAAGAAGACCCATTGGACAAGTACTTGGTGCAGCACGATCGTGCAGAGAAAAACGATATTGGTCATGTGCACCTGATAGACAAGTATTTAATTCGTCACAATTCTGCAAAGAAAGATAAGTCCAAGCAAGACAAAAATAGTAAGCAGAGTACAGTGGTACGAGAGGCCCACCACGACTCTGCAAACAAAGATATCATCAGTCAAGAGGACCCAATAGACAAGTACTTGGTCCGGCATTATTCTGCAAAGAATGATAACGTTGGGAAAGATAGCGTATTAGACAAGTACTCAGGTAACAACGATTCACCTGCCACATCTAACTCGATTGAACAGGCTTCTTCCAATTTACAAAACGTCGGACAAGAGAACCTGATTGACAAATACATGGTTCGTCACGACTCAGCAAAGAAAGCTATTGCTATTCCCCGATTTactacaaataaacataaagttgTTAAGAAAAACGAAGAGAGCTTAGTTGACAAATACCTGGCTCGCCACGATTCTAATAATAAAGATAACGAACAAGAAAGCGTATTGAACCAGTACCTGGTTCGCCACGAATCAACAAAGAAAGATAACGTCACACTCGACAAACAAGAAAGCGAGTGCGTGGTTCACCAGGATTTAGCTGATCCCAATAACGTTGAACAAACTAACCAAAGGAGTTTGGCGGAAAACGAATCCACAATGCCACCTCCTGACAAAAAGGATAAGAAGCAGCAAGCTTTGCTTCAAACTTACTTGAATCCAGGAACTGCTGCTACAGTCATCGCAGTAAATGCTACTGATGAGAAAGGTCTGTCTTCTGGAATGGTGGAGTATTTTGTGGACGAAGATGGCAAATACTACTATCAGTCGACGGTTGATGGCCAAGCTCTGGTCATGAACACACCGGCAGTCAACCAGGATGAGACTGCTGAAACATCAGATGCAATTATGGCTGACCCTGGAGACACTTTCCAGACTGTTACCTTCGTACCCTCGGAAAACAATGGAGAGGTCAGCTATGTGCTGGTCGTGCAGGAGGAGAAGGCTGTTGTCAACATTGATCTCAAGGTACCAGTACAGACGGAGGAGGAGAAAGGCAACGAAGACGTCTACAACTTCGAAGAAGAAGAAGCAGGAGAGGAGGCATCGGAAGGTGAAGACGAGGAGATGGCAGAGGGCTCCACAGCAGCCCCCAAACCAGCACAAAAACGGACCAAGACCCTTAGACCACACTTTACTTGCAATTTTTGCTCCTATACTAGTCATCGACGTTACCTGTTACTCCGACACATGAAATCTCACTCTGAGGACCGCCCTCACAAGTGCAGCGTGTGCGAACGTGGCTTCAAGACGATCGCCTCTCTGCAGAACCATGTCAACATGCACAATGGCATTAAGCCTCACGTCTGCAAGTACTGTAATAGCCCCTTCACTACCTCTGGTGAGCTGGTGAGACACGTGCGCTACAAGCACACCCACGAGAAACCGCACAAGTGCTCGGAATGTGACTATGCGTCCGTCGAGCTATCGAAGCTACGGCGCCACGTCCGCTGTCACACTGGCGAGCGGCCGTACCAGtGTCCACATTGCACGTACGCGTCTCCGGACACGTTCAAGTTGAAGCGCCACCTTCGTACGCATACTGGGGAGAAACCTTACAAGTGTGAGCACTGCAATATGTGCTTCACTCAGTCCAACTCACTGAAGGCTCACCGGCTTATTCACAATGTTGCTGAGAAGCCAATGTACTCGTGCGAGTTGTGCCCGGCAAAATGCGGGCGTAAAACAGACCTGCGGATTCATGTACAGAAGCTACATACATCGGACAAACCGCTCAAGTGCCGGCGCTGCGGGAAGTCCTTCCCAGACCGATACTCCTGCAAAGTGCACAATAAGACTCATGAAGGCGAAAAGTGCTTCAAGTGTGACATTTGCCCCTACGCGTCTACTACACTGCGCCATCTGAAGTCTCACATGCTGAAGCATACTGATGAGAAGCCATTCCTTTGTGACCTCTGCGATCAATCCTTCAGGCAAAAGCAGTTGCTTCGTCGCCATCAGAACCTCTATCACAATCCCAACTACGTGCCGAAGCCTCCTAAAGAAAAGACGCACACGTGCCACGAGTGCAAGCGCATGTTCGCACACAAAGGCAATTTGATTCGTCACCTGGCTATCCATGACCCAGATTCTGGTCATCATGAGCGCGCTCTCGCCCTCAAGATCGGCCGGCAAAGGAAGGTCAAGTTTATTGAAGAGGAACCTATGAGGGATATCCGTGTGGTCGATTCCTCGGATACAGCAGAGATGATGAAGCTGGGTTTGAGTAATAATGAGCTGAAACGAGGCGAGCTCGTGACGGTGGCTGATGGAGACGGCCAGCAGTACGTGGTGCTCGAAGTCATTCAGCTGGAGGACGGCACGGAGCAACAAGTGGCTGTCGTTGCTCCAGACTATTTGGATGAAGATGAACAAGGAGAAGAGGAAGAGGAAGAAGAGGAGGAAGAGGAAGAAGAGACACAGAGGACTTTTACTGTCAAAGACCCAGTGGCTGAACGCAGCATTAAACTTGAAAAAGAAGTAGACACATGCTTTGGATTCGATGAGGAGGATGAGGACGGGGAAGATGAAGATTATACTGATAAAGTAGTTTTGCGTTTAGTTTAG
- Protein Sequence
- MLLVLVWPEGLVCEIKIEPKKKEENQASLIGQVNPNNFGYIHLFPSSALRGEGATIQVHPASRESLVCPGSVAGQVTPNYRKNFTTRSYFIGPHRKIITDPDPWYIRRPRTKPVIKIHQNIVIAPARVVDQKAPPSKERLASQYSTNEGNFNQDDHENLIQDCRQSKQYLSNINIQENNQQQAIIKDGNGNLINQSPKDKQDLNQKFLERCDFANQDNVNQYYRESLIQKQPVRQDSANQQNNRRDNQGDLIQKYLVRQASANQTNVNQGNQESPIQKHLVCQDPLNQNNVDHDINKYLIRHDSASKRKLGQDIQENLLTKSTKDVGQEDLFDKQLIRYDSAKKTYEGQEDSLGQYSVQGDIVKKQKIGQKNSVNNCLIRHDSAKKDNSRPEDILNKPLVQHDSDEQNSVGYENLLDKFLIRRSSLDNIDQENALRKLRADHHSTKKHNIDQKSLVNQYVAQHDFAKNDNFGQKELLDKYLFHYSSAKKDKPVREEIIDKYLDCHVTRRTGNNETITNEFVAPPDSVKKDNDDQRDSIDRYLVLHDSGKKDNFKQQSTINEIVSHHESGKKNYAGQEDPLDKYLVQHDRAEKNDIGHVHLIDKYLIRHNSAKKDKSKQDKNSKQSTVVREAHHDSANKDIISQEDPIDKYLVRHYSAKNDNVGKDSVLDKYSGNNDSPATSNSIEQASSNLQNVGQENLIDKYMVRHDSAKKAIAIPRFTTNKHKVVKKNEESLVDKYLARHDSNNKDNEQESVLNQYLVRHESTKKDNVTLDKQESECVVHQDLADPNNVEQTNQRSLAENESTMPPPDKKDKKQQALLQTYLNPGTAATVIAVNATDEKGLSSGMVEYFVDEDGKYYYQSTVDGQALVMNTPAVNQDETAETSDAIMADPGDTFQTVTFVPSENNGEVSYVLVVQEEKAVVNIDLKVPVQTEEEKGNEDVYNFEEEEAGEEASEGEDEEMAEGSTAAPKPAQKRTKTLRPHFTCNFCSYTSHRRYLLLRHMKSHSEDRPHKCSVCERGFKTIASLQNHVNMHNGIKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVAEKPMYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCFKCDICPYASTTLRHLKSHMLKHTDEKPFLCDLCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHTCHECKRMFAHKGNLIRHLAIHDPDSGHHERALALKIGRQRKVKFIEEEPMRDIRVVDSSDTAEMMKLGLSNNELKRGELVTVADGDGQQYVVLEVIQLEDGTEQQVAVVAPDYLDEDEQGEEEEEEEEEEEEETQRTFTVKDPVAERSIKLEKEVDTCFGFDEEDEDGEDEDYTDKVVLRLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -