Sexi005322.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spodoptera exigua
Gene Symbol
-
Assembly
GCA_011316535.1
Location
CM022049.1:2546197-2555488[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 3.9e-06 0.00031 21.4 2.1 1 23 222 244 222 244 0.98
2 11 0.00069 0.055 14.3 0.1 1 23 251 274 251 274 0.97
3 11 0.017 1.4 9.9 1.5 1 23 278 300 278 300 0.92
4 11 0.0092 0.73 10.8 1.6 1 23 305 328 305 328 0.98
5 11 0.025 2 9.4 2.3 3 23 334 355 333 355 0.92
6 11 0.023 1.8 9.5 0.2 1 22 367 388 367 392 0.93
7 11 0.023 1.8 9.5 3.4 3 23 411 432 410 432 0.95
8 11 5.1e-05 0.004 17.9 0.5 3 23 488 508 486 508 0.97
9 11 0.00074 0.059 14.2 2.4 2 23 514 535 513 535 0.97
10 11 4.4e-06 0.00035 21.2 1.4 1 23 541 563 541 563 0.98
11 11 2.4e-06 0.00019 22.0 1.2 1 23 569 592 569 592 0.98

Sequence Information

Coding Sequence
ATGGAGACTATAGCTGGAGTTCATaaaaatggAATGTGTTTGGATGGTCTACCACAATACATCTGCTACCAATGTGCACCAATCTTGATGAATTGCCATAAACTTATAGAGAAATGTTTGTTTACTCAAACTGTGCTACTGGATATATTTGTTAAGAATGGACAGATCACAAAACGTCTTAtagaagaacaaaataaaacaacagattCAATATCTGCATCCGCAAGTACGGaagaattgaacaattatttggTAAAGTGTGATGAGATCAATTCATCACCATTCACTCCGGACtactgtgatatttattttaaggatgAAGATACTAATCACATTGATTCAAGAAGTTATACTATCCTAGGTCCAAATTGTAAAGTTGAAACGGATGGAGAGgaattttgtgaaaattttgatttagaaGATGATGGAACAAGTTTGGTTCAATCAATCGGAAGTTCGAAAGCGAATATGGGTGAGGATAAAAAGATTAAATCTCAGAAATATACAAAGAAAGAAGTGACGACGCCGAAAAAAAGCAAAGGACTTACACCAGATGAGAGTAGTATGctgaaatattttgatattgtaCAATTATCGtTACAAGAACAGATAGAAGAATGGCAGAAGAGTGCTATCCATCGCTCCCTGACAAGCGAAACGGTGTACcaatgtaaaatatgtaagaaaaCATTTGCCAACTCCAACTCCTACCAACTTCACATTAATTATCATGATCCGggTTTGGGCCAATATGAATGTCCGGTGTGCAAACTTCGCTTTAAGAGCGCAACGTTGGCGGCTGCACATAGGAAACGAGCGCACAGCAAGAAATTCTTTTGCAAAACGTGCCCCAAGTCTTTTAATAACGTcaACGTGGCCAAGAAGCACAGTCGTTGGCACTCAGGTTACCAGTACAGATGTCCCCGCTGTGCGTTTGCGTCGGTGCACGAGTCAGCGCTATGTGCACACAGACGGCGCGTGCACGGGCCCGCGCACGGCTGTGTGCACTGCGGCCGGCACTACTCCACCGCCAGGGGACTCAGCGCGCATAAACACGCTGCGCATGCGCAGGCTGacGACAAGGATATTAGCAAGGAGTATCGCTGTGAACAGTGTAACATCAACTTCGCGTCAGAGGGCGCTAGGCGAGTGCATCTACTCACCTCTAGCCAACACAAGAACAAATCTAGTTTATGcGATTCAACAACCGATCCCGTTCTGCGGAATTGTTGCAATAAGTGCGGTGTGGAATGTAATTCTTTCAAGGAACTTTTGGTGCATATGAGAGCGTCGCACCCCCGGTCGCGACGATCTGATCAACCTTGGAAGGGAGACACTCCATATCCATTAGATTGTGAGTTGTGCGGTGAAAGGATATCATGTCGCAAGAAGCACTGGTTCCATGTACGTAGACGACATCCAATGCACGTGGACTCGTACCAACCAATCATAACTGTCATCTGTGATACCTGCGGGAAAGGATTCCAGAATTCCACAAAGCTACGGATCCACCAGTTACGTCACAGCACTCCCAAGGTACGGTGTGCGCATTGCCCACGACTGTTCTACGACAAATACGCCCTCAACAGACATGCGCATACGCATAGTGAAGACAAACCACACCAGTGCCGCACTTGTGGGAGGGCATTCAAACTGCTTAGTAACTTGGAAAGACATGCCAGGGTTCATACGGACGTCGCTCCATACGAATGTACGATTTGcaacaaaaagtttaaatattcgTCAAGCGTGAACCTTCATGTGCGAACCGTACACTACAAATTACCTCATCCAACCAGAAAGAAAAGGAGCAAGTCTGGAAAGGATATTGGCGActcttaa
Protein Sequence
METIAGVHKNGMCLDGLPQYICYQCAPILMNCHKLIEKCLFTQTVLLDIFVKNGQITKRLIEEQNKTTDSISASASTEELNNYLVKCDEINSSPFTPDYCDIYFKDEDTNHIDSRSYTILGPNCKVETDGEEFCENFDLEDDGTSLVQSIGSSKANMGEDKKIKSQKYTKKEVTTPKKSKGLTPDESSMLKYFDIVQLSLQEQIEEWQKSAIHRSLTSETVYQCKICKKTFANSNSYQLHINYHDPGLGQYECPVCKLRFKSATLAAAHRKRAHSKKFFCKTCPKSFNNVNVAKKHSRWHSGYQYRCPRCAFASVHESALCAHRRRVHGPAHGCVHCGRHYSTARGLSAHKHAAHAQADDKDISKEYRCEQCNINFASEGARRVHLLTSSQHKNKSSLCDSTTDPVLRNCCNKCGVECNSFKELLVHMRASHPRSRRSDQPWKGDTPYPLDCELCGERISCRKKHWFHVRRRHPMHVDSYQPIITVICDTCGKGFQNSTKLRIHQLRHSTPKVRCAHCPRLFYDKYALNRHAHTHSEDKPHQCRTCGRAFKLLSNLERHARVHTDVAPYECTICNKKFKYSSSVNLHVRTVHYKLPHPTRKKRSKSGKDIGDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-