Sexi021084.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022070.1:7328073-7341377[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00023 0.018 15.8 0.7 2 22 171 191 170 194 0.89 2 10 2.6 2.1e+02 3.0 0.0 3 23 198 219 197 219 0.93 3 10 0.00053 0.042 14.7 0.4 1 23 224 247 224 247 0.95 4 10 4.8e-06 0.00038 21.1 0.5 1 23 252 274 252 274 0.98 5 10 0.18 15 6.7 1.2 2 20 278 296 278 298 0.91 6 10 1.3e-06 0.00011 22.8 1.2 1 23 324 347 324 347 0.95 7 10 0.001 0.08 13.8 0.6 1 23 353 375 353 375 0.95 8 10 0.03 2.4 9.1 0.1 1 23 381 403 381 403 0.97 9 10 0.0016 0.12 13.2 0.3 1 23 409 432 409 432 0.94 10 10 0.00015 0.012 16.4 1.3 2 23 439 461 438 461 0.94
Sequence Information
- Coding Sequence
- ATGAGCCGGCAAGTGGATATAAAGGCGTTAGTGTCCCATATAGTGCGTGGAGATGGCTTAGATAGATGCCGAATTTGTATGGGTGACACGAGCGAGGGCCAAGTTCATTTAGAAGACACTGTAATGATGGATGGAGACAAGCCCCTGACGCTTGCTGAGATTCTGGAAGTCATTACGGGAGTACAGATTAAAGAAGAACAGCTAACACCAGTTGCGGTTTGTGTGACCTGCGCAACCACGGCTATCAACGCACAAAATTTTCGTATCTTCGTAAGAAACTCGCAAACATTATGGAAACAAACCATTATAAATTTAGACACCCTACCAGACACTATATCCCCGCCAATTAAATCAGTTTGCGCGTTCGTAAAAACTTCAGATGTTTCAATTCAAACGCTTAAAGGCTATAACTCAACAGACGCGAAGACAATTCTAAATCGGATCAAAAATCGAGTTGTGAAAAAGCCCATAGATAGAAGGCCCAGAGGCGCGAGGACTGGGCCCTCATGCAGTTGCCCAGATTGCGGCAAAGGCTTCTTGAGTCCTTACTACCTAAATATGCATCTAAGAAACAGCGGACATAAAGAAGCGTGCCTTATCTGTGGCTCAGTTCTCGTCAGAGGCAATGACATGAAAGAACACCTACTAAACGTACACAATGAAGTGACTTTCTTATGTAAGCAATGTCCTTTACTATTCCCATCCGAGGATCAGTTAAAAAAGCATGTCAAAAAGGCGCATAAAACCGGAGATTTTACTTGCGCTGATTGTGGGAGGACGTTCGTAAGAAATGCATCATTCGAAAATCATTCGCAAATGCACGCTGTTAGAACTTGTCGAGCTTGTGGAATGCAGTTCACGAATCGTGGGTGTTATAGGGAACATAGAGCTCGATGTGAGCCCGATGCCAAGCCTAAAACGCACAATATGCCTCGTAACCGCCGCTCCAACATCAGAGACCCCGCTACCTTCACCTGCGACCATTGCGGTAAAACCTACAACTCCAGACCACAGCTCAAAAATCACATACTATGGATCCATATGGACGTACGACCTCATCAATGTCAATGGTGCGAAAAGAGGTTCTATACCCCAGCGCGACTGGCTGAACACACGGTAGTTCATACGCGCGTTCGAAATTTCGAATGTGACATTTGTGGCGCGAAACTCGTATCCAAAATGGCGGCGGTTTATCACAGACGAAGGCACACTGGTGAGAGACCTTATGAATGTGAGGATTGTGGCGAGAAATTTATTTCAGCTTCACGGAGATCCGAACACGCTAAACGTAGACATAATAAGGGGTATAAGTTGCCGTGTTTGAAGTGTTCAGCGAATTTCGTGAGGAAACATGAATTGAAAAGGCATATGGACAAGGCTCATAGGGGCCAAGATTTCGTAGTTTGGATTTAG
- Protein Sequence
- MSRQVDIKALVSHIVRGDGLDRCRICMGDTSEGQVHLEDTVMMDGDKPLTLAEILEVITGVQIKEEQLTPVAVCVTCATTAINAQNFRIFVRNSQTLWKQTIINLDTLPDTISPPIKSVCAFVKTSDVSIQTLKGYNSTDAKTILNRIKNRVVKKPIDRRPRGARTGPSCSCPDCGKGFLSPYYLNMHLRNSGHKEACLICGSVLVRGNDMKEHLLNVHNEVTFLCKQCPLLFPSEDQLKKHVKKAHKTGDFTCADCGRTFVRNASFENHSQMHAVRTCRACGMQFTNRGCYREHRARCEPDAKPKTHNMPRNRRSNIRDPATFTCDHCGKTYNSRPQLKNHILWIHMDVRPHQCQWCEKRFYTPARLAEHTVVHTRVRNFECDICGAKLVSKMAAVYHRRRHTGERPYECEDCGEKFISASRRSEHAKRRHNKGYKLPCLKCSANFVRKHELKRHMDKAHRGQDFVVWI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786248;
- 90% Identity
- -
- 80% Identity
- -