Sexi008989.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- Zfy1
- Assembly
- GCA_011316535.1
- Location
- CM022077.1:1860366-1865895[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0025 0.2 12.5 6.3 1 23 151 174 151 174 0.97 2 18 0.00023 0.019 15.8 0.9 1 23 183 206 183 206 0.96 3 18 0.014 1.1 10.2 0.7 2 23 219 241 219 241 0.97 4 18 0.00032 0.025 15.4 0.8 1 23 250 273 250 273 0.97 5 18 0.00016 0.013 16.3 2.7 1 23 285 308 285 309 0.96 6 18 0.0001 0.0082 16.9 0.7 2 23 336 358 335 358 0.97 7 18 0.0011 0.088 13.7 1.2 2 23 368 390 367 390 0.96 8 18 0.073 5.8 7.9 1.8 3 20 396 413 394 415 0.91 9 18 0.12 9.3 7.3 0.4 2 21 420 439 419 442 0.94 10 18 0.3 24 6.0 2.2 3 23 452 473 451 473 0.93 11 18 0.00043 0.034 14.9 3.2 1 23 478 501 478 501 0.96 12 18 0.00019 0.015 16.1 1.8 2 23 513 535 512 535 0.97 13 18 0.055 4.4 8.3 1.1 1 23 560 583 560 583 0.92 14 18 0.51 41 5.3 0.1 2 23 590 611 589 611 0.90 15 18 0.12 9.2 7.3 3.1 3 23 618 638 616 638 0.96 16 18 1.6 1.3e+02 3.7 0.9 3 23 646 668 644 668 0.90 17 18 0.015 1.2 10.1 0.1 1 23 704 726 704 726 0.97 18 18 0.067 5.3 8.0 1.9 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- atggaacGTCAATTCGAAGTAGAAGTTAAAATAGAAAGTGTTGATTCAAGAAAGGATCCTACCTCATTTTTACCCGAGGAGCCGATGTCTTatgaaataaagaagaaaaagaaaaagaagaaaaagcaaCAAGAAGACCCTTTCAAAGATATCGATGATAAAGTTGATATAAAAATGGAACCTCTCTCTTTGTTGGATCCTGAAGTTAAAATTAAGGTTGAAGATATTGAGGTGCAGTTAGATTTTAATGATTTTGCTGACAGCAGTGGTCTGATGGTTGAGGGACCTCACAGCGAAGACAGTCAGGAGCCAGCCGTGAAAATCGAACAACAAAATCATGAAGCAGTTCTACTTACATTTGAAAGCGTCATGAACGAAAGAGCACAGCTCATAGACCAATCTGATATGTTCCCTAACAGCCAAGATTTGCCTATCCAACAAGCACCCAGTCATGTCTGCAAGGTCTGCCATCTAGTCTTTCAATCAAAGAAAACTCTTCGAATGCACCAGAAGAGGAAACACCAATCCTTCAGAAAATCATTTAAACACATCTGCGATTACTGCGGCATGTCTTATGAAATGAAGAATAGTTTAGTTGCTCACATCAAGAGGAAACATGGCCCGAACTCCATGCCGGACGACAGAGAAGAACGTACTTGTGAAATATGTGCTCTAGTCTTCAAAGGAATGACCCGGTTAAGAATGCACATGAGAAGAAAGCATGGAGCCTTCCAAGAATCATTCAAACATGTCTGCGAAGACTGCGGCTTAACTTACGATAAGTACAGAAGTTTAATAGTCCATATACAACGCAAACATTCTAATTGTAAAAAACCAGAAATCAACCAATGGTACAACTGTCCGTTCTGTCcaaaaatatttacgaaaaGAGAATCTTATGCAAGACACGTGCAGAGAAAACATCACGTAGCCGATGAAGATATCAAAAGTGAAAATAGAGATGAGTATTTGGAGAACAGCAAGAATGAGGAAACTGGTGAGATTACTTGTAAAGAATGCCCCCTAGTCTTCTCTTCTGTCAACTTCTTGAAACTGCATATGAGGAGAAAGCATAATGCTTTGAAAGAAGATTTCAGATTGAAGTGTCGGATTTGTAATTTGTCTTACGATAAAATTGAGAGTTTGAAGAGGCATGTGAGACGAAAACATGACAAGCGGTCTCACTGCGAAGTGTGCAATAAACAGTTTGATACCCGAGAGCTGTATCTGAACCACTCTCATACAAAGGAAGTTAAAGAATGTAATATTTGCGGCATCTTATTGGCGTCGCGAGGAGGTTTAGCCAAACATTTAAGGTGCACACACAAATTAGACTCTCCGAAGACCGTCTTCTGCAACTTATGTAATGAAGGATTCCACGATAAACGACAGCTGAAGCCGCATTTCATGAAAGTGCATTTAAAAGTGTCGTACACATGTCGATAttgtaagaaaatattcaaaGCTAAGGAGAGTTATAGACGACACATATTTATTAAGCATCCGAATGCAAATCATTTGAACACTCAGGCACAGAAATGTGAACAATGTAGTGAGATGTTTAAGGACGAATTTGATTTGTGTAAGCATATAAATATGGTGCATGGATCAGAGGATATAGGTAAGGATGAAAAAGAGGTAGAAATTAAAAGAGAGGATCAAGATATAAAAGATAGCTTCCAGTGCACCAAGTGCCCGGATACATTCTTAACATGGGAACAGCTGAAGTTGCATCACGAAGCGAACCATCACAGCATACAGGAGACTCAATGCCAGATCTGTGGTGAAATTCTTCCAGGTTACGagttacaaaaacatataaaagcTCTTCACACAGATACGGAGATGCATTGTAAATATTGTGAGTTTAAAACGAATATTAGAGTTAGTTTGACACAACATATGTTGAGACATAAGAACGCTGAGACGTTGAATTGTGATTACACTGGATGCAAGTACAAGACGTTTTATGAAGGTGCTATGGAGAAGCATAAGAGAAAACATGCTGACCAAGGAGTGAAACTGCAATGCACCCAGTGCCCCTTCCAGACAATgaacaaatacattttgaaataccACGAAGAAGCTCACGAAACAGGGAAAAAGCGATATATGTGTGATCAATGCGACTATGCCACGATATTACCCGCCAATCTTGtacaacataaatataaacattctaCTGAGAAAAGGTTCAAATGTGAAGTATGTCCGTTCGCAACGAAATATAATACATCACTGCGGTTCCATGTTAGGAAAAAACACTGTGATCTCCCGACATTcagttaa
- Protein Sequence
- MERQFEVEVKIESVDSRKDPTSFLPEEPMSYEIKKKKKKKKKQQEDPFKDIDDKVDIKMEPLSLLDPEVKIKVEDIEVQLDFNDFADSSGLMVEGPHSEDSQEPAVKIEQQNHEAVLLTFESVMNERAQLIDQSDMFPNSQDLPIQQAPSHVCKVCHLVFQSKKTLRMHQKRKHQSFRKSFKHICDYCGMSYEMKNSLVAHIKRKHGPNSMPDDREERTCEICALVFKGMTRLRMHMRRKHGAFQESFKHVCEDCGLTYDKYRSLIVHIQRKHSNCKKPEINQWYNCPFCPKIFTKRESYARHVQRKHHVADEDIKSENRDEYLENSKNEETGEITCKECPLVFSSVNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDKRSHCEVCNKQFDTRELYLNHSHTKEVKECNICGILLASRGGLAKHLRCTHKLDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKIFKAKESYRRHIFIKHPNANHLNTQAQKCEQCSEMFKDEFDLCKHINMVHGSEDIGKDEKEVEIKREDQDIKDSFQCTKCPDTFLTWEQLKLHHEANHHSIQETQCQICGEILPGYELQKHIKALHTDTEMHCKYCEFKTNIRVSLTQHMLRHKNAETLNCDYTGCKYKTFYEGAMEKHKRKHADQGVKLQCTQCPFQTMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_01363349;
- 80% Identity
- -