Sexi020683.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- Kr
- Assembly
- GCA_011316535.1
- Location
- CM022057.1:3037054-3053692[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00038 0.031 15.1 2.1 1 23 279 301 279 301 0.95 2 11 0.035 2.8 8.9 1.3 1 23 308 330 308 330 0.96 3 11 0.056 4.5 8.3 0.1 1 23 334 357 334 357 0.98 4 11 0.018 1.4 9.8 4.8 1 23 364 386 364 387 0.96 5 11 1.4e-06 0.00011 22.8 0.5 2 23 393 414 393 414 0.98 6 11 8.9e-06 0.00071 20.2 4.4 1 23 420 442 420 442 0.99 7 11 0.00027 0.022 15.5 1.8 1 21 448 468 448 473 0.93 8 11 1 82 4.3 0.5 1 23 481 504 481 504 0.94 9 11 0.00012 0.0095 16.7 0.3 1 23 510 533 510 533 0.96 10 11 1.3e-05 0.001 19.7 0.5 1 23 542 564 542 564 0.98 11 11 4.6e-05 0.0036 18.0 1.7 1 23 570 593 570 593 0.96
Sequence Information
- Coding Sequence
- atggaaacAGTGAGTTTAGGTAACGAAGATGATGTTAAACTTGATTTTGATCATCCAAAAACGATATGCAGGTGTTGTTTAACCACTGATAAACGAATGAACAACGTCGTGTCTTTCAAGCAGCTATTTAAGGATTTAGCTGGATTAAACGTAACGGAATCAGATGGGTTACCTCAATGGCTCTGCTACGAATGCAGCGCATTGTTGCAGAAATCTGTCAGGTTCAAACAGAAGGTCGAGAAGGCACACACCATGCTGTGCGAGTACCTTGCTCGATGTGCTCCGttccCAATAGAACCGCAGGATGAGGAGTTGACAAAGTATGCAAGCCCACACCTTGGCACCACAAGTGTGCTTGCGATAGATATTGTGGGCAAAGGGAAGGCTGGACAGTTCGAGGTTTATGAGCATGAAAAACGACAACAGCTTTCTGCCTTAgatgatattataataagtaaaattgaaGACGAGAATGTTAAAGAAGAAACTCAGTTTTCAGATTATGAAGATAATATGACGTTGGAAGAATTTAGatCTGTAGCGAATAAGATAACGGAAGATGATTTAGCGTGTTTATTACAAGACACCGACCAGATAGAAATGAAAGAAGAAGTCGTTTCTACCAAGAAGAGAAAGCCCAAAGCCAAAGAAgttaagaagaagaaaaaagataataataccGATTCAAGTAAAGAAGATGGCGAATACGAATCCAAGTCTTCAATCAGAAAACCTATAGAATTAGACCCCACCAAGATAAGGATAGTCACTCTCAATCCAGAGGAACAGATTAAACAGAGAGAGgagGAAAGTAAAAATGGACGGAAGTATCCGTTTTTATGCAATCTGTGCTATAAGGGCTTCAATTTTGAGTCGAAATTGCAAAATCATATGAGCAAACACAGTCCATCCCGCGGACCTTACGAGTGCAAGATATGTCACATGTATCTGCCTACGTCGTATAGTTTTAGCGTACATTCACTCATACACACAAGAAGGTATGAATGTTTGGTCTGTGGACGGCGGATGATCGACAGACCATCGATTATAGAGCACTATAGaacaCAACACGAGGGTTTGCTAACTCGCTTCACTTGCCAAATATGTGGGAAAGTATCcaaTAACAACAAAActcacagaggtcatatgcgGAACCACCACGGCGGGGATCGACCCAAGTGTGATCAATGCgggaaaacatttattaataaggaCTCCTTAGTCGAACATCAACAAATACACCTAGGTATAAAGAATTATGAATGCTCTATATGCAATAAGCGGTTTCGAACTAGGACACAAATTAATCACCACCAAATGACTCACACGGATGTCAAGGAGTTCTATTGCGTCGAATGTGATGTCAGATTCAAATCGGCTCACAATTTGCGAACGCATCTAACGAGAAGTTTGAAACACAGAGACAAGCAGAGCTTTaaGCACGCTTGTAGCCGCTGTCCGGCCCGGTACGCGTGTGCCCAGTCTCTGGCGGCGCATGTCCGCGTCCAGCACGAGGGGCACCGCCCCCACGTCTGCGGGGACTGCGGGGCTGCGCTCGCGACGCGATCCTCGCTGGCTAAACATATGCACTCTGTCCATATGGGACTCCGGCCCCCGCCTCGACACGTCTGCGACACCTGCGGGAAAGCTTTTAGGGGTAAAAGCGTTCTAGTGAACCACGCTCGCACGCACACAGGTGAAAAACCGTTCGAGTGTGCACACTGCGGGCGTCGGTTCACGCAGCGTACGGCCATGCGGACCCACGTCAAGCTCGTTCATCTTAAGCTGCGCCGGACTGCTAAGGTTAAACCAGTCGCGATAATAGATGTCCAGTCATCAAGAGTGAATGTATTTAAGCCGGACCCCCCGATAGCAGCAGATACCTGGCGACAACCCTGCGATGTCTACTTCCAAGTCACCGCGGGGCCCTGA
- Protein Sequence
- METVSLGNEDDVKLDFDHPKTICRCCLTTDKRMNNVVSFKQLFKDLAGLNVTESDGLPQWLCYECSALLQKSVRFKQKVEKAHTMLCEYLARCAPFPIEPQDEELTKYASPHLGTTSVLAIDIVGKGKAGQFEVYEHEKRQQLSALDDIIISKIEDENVKEETQFSDYEDNMTLEEFRSVANKITEDDLACLLQDTDQIEMKEEVVSTKKRKPKAKEVKKKKKDNNTDSSKEDGEYESKSSIRKPIELDPTKIRIVTLNPEEQIKQREEESKNGRKYPFLCNLCYKGFNFESKLQNHMSKHSPSRGPYECKICHMYLPTSYSFSVHSLIHTRRYECLVCGRRMIDRPSIIEHYRTQHEGLLTRFTCQICGKVSNNNKTHRGHMRNHHGGDRPKCDQCGKTFINKDSLVEHQQIHLGIKNYECSICNKRFRTRTQINHHQMTHTDVKEFYCVECDVRFKSAHNLRTHLTRSLKHRDKQSFKHACSRCPARYACAQSLAAHVRVQHEGHRPHVCGDCGAALATRSSLAKHMHSVHMGLRPPPRHVCDTCGKAFRGKSVLVNHARTHTGEKPFECAHCGRRFTQRTAMRTHVKLVHLKLRRTAKVKPVAIIDVQSSRVNVFKPDPPIAADTWRQPCDVYFQVTAGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363348;
- 90% Identity
- -
- 80% Identity
- -