Sexi007272.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spodoptera exigua
Gene Symbol
L
Assembly
GCA_011316535.1
Location
CM022051.1:8962210-8976254[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.3e-06 0.0001 22.8 1.7 1 23 101 123 101 123 0.99
2 16 0.56 45 5.1 5.8 1 23 129 151 129 151 0.97
3 16 7.5e-06 0.0006 20.5 4.1 1 23 157 179 157 179 0.99
4 16 2.3e-05 0.0019 18.9 0.1 1 23 185 207 185 207 0.98
5 16 0.0011 0.085 13.7 0.0 2 23 223 245 222 245 0.94
6 16 5.3 4.3e+02 2.1 0.1 9 23 276 291 272 291 0.93
7 16 0.27 21 6.1 0.0 3 23 343 363 342 363 0.97
8 16 0.15 12 7.0 0.0 3 23 378 398 377 398 0.91
9 16 0.0002 0.016 16.0 0.6 1 23 406 429 406 429 0.95
10 16 0.031 2.4 9.1 0.0 1 23 434 457 434 457 0.92
11 16 0.012 0.97 10.4 0.1 1 23 518 542 518 543 0.94
12 16 0.00018 0.014 16.2 0.1 2 23 606 627 605 627 0.96
13 16 0.052 4.1 8.4 0.0 1 23 635 657 635 657 0.97
14 16 0.78 62 4.7 0.3 1 23 761 783 761 783 0.94
15 16 0.0031 0.25 12.2 0.1 1 20 791 810 791 813 0.95
16 16 0.14 11 7.1 0.3 1 23 820 842 820 842 0.94

Sequence Information

Coding Sequence
ATGCTGCGCCAAGTGTTATTTGCAGCGGAGACGCCGCCCTGCCTTTTTATTAGCCTCGCTCGTTGGTGTGCTCGTGTCATTAGATACTGTTGTTTTACTTGTTCTGTAAAGTGCCGGTCATGTGAGACTGATAATGTTCCTACAGAGGCGCTGGGCAGTGTGGGCAGTACGGCGGGCAGCTCTTGGCCGTCGTCGACGCCGGAGCCGTCACCGTCGCCAGCCTCCACACCGACCTCGGCCGACGCCGCCGACGCTGAGGCCGAACCACCCTTCACTCTCGGCGCCACAGAGCACACCCCTTACCAGTGCCAGTTCTGCGATAAAGCTTTCCCCAGGCTTTCCTATCTCAAGAAACATGAACAGACGCATTCGGATCAGATGCCCTTCCGATGCGAGTTCTGTTCTCGCCTGTTCAAGCACAAGCGATCCCGCGACCGGCATGTCAAGCTGCACACTGGAGACCGCAAGTACCGCTGCGCTCACTGCGAGTCAGCGTTCTCTAGGAGTGACCACTTGAAGATTCACATGAAAACACACGACAATCAGAAGCCATTCCAATGCACTGTGTGCAACCGAGGGTATAACACAGCAGCAGCTCTGACGTCACACATGCAGGGCCACAAGCGGGACCGCGAGGGCCGGGAGCCTGACAGGCGTCGAGCACTGCGCTGCCTCAGATGTGGAGACGCTTTTCGACGACCTGACCTGCTCCAGGCCCACATGGTGAGCGCCCATGGCGTGGACACAGCAGCTATGACCCCACCTCGGCGTGTCGCCTCTCAACCGCCGCCCACGCTGCTCGCCTGCATATATTGCACTCGCGACACCTTCACCAGTATGGAGCAATTACAACTTCACGTCCGTGCGGCACACTCTGCCCTGCTAAATGGAGAGGGACCCGTCCAAGTGGATCAGCCTGCACCTACAGATCTAAGTAGGCGAGCTCCCGATGAAGTACCCCCAGTGAAACGTCCTCGTTCCGGCTCAGGCACTCCTCAAACAACTCTATCACCAAGCACACTGCTCTGCAATCAATGCGATGCCGCGTTACCGGACTTTGAAGCTTTTAGGGCTCATTTGAAAGGACATTTAGAGGAAGGAGGAGAGCTAGGACGCTCAAGCCCCGCTCCGTGTGTACACTGCGGCGCTACCTTTGCGGATGCCGCAGCTTCGGAGCGACACTTGACGGCTCATTACTTGGCAGTTTCCTGCGAATACACCTGCCATAGCTGCGCTAGGAGTTTCTCAGCTCCGGATGATCTGCAAAAACATCTCCTCGAGTTGCATGCCCATCACCTTTATAGGTGCGCTCTATGCAAGGAAGTCTTTGATTCGAAGGTTGCAATTCAGGTTCACTTTGCTGTAGCACACAGCGGTGAAAACAAGGTGTGGGTGTGTCGTTCTTGTGGTGTGGGTGCGGGTGCTCTACGCTCTGAAGCTGAAGGCGCTGCCCACGTACGCTCTCGGCATGCAGCCGCTGCCCCGCGCTGTGCGTGTGGGGCCTTGCTTGGCAGCGGTGTGGCTGCGAGGACGCCCAGACCACATCGCGCATATCGTTGTCCCGTGCCAGCATGCAACGATGCTTTTGCAGTGCAGTATCTACTTGAAAGGCATATGCAAGCGCATCATGCAATGCAACAACAGGTCTTAAACGGAGATCTACCTAGAGTGAAAAGAATGGAAGCAAGCAATGGTGTTGAAGGTGGCGATGATGCAAGGTCTCCGTGTACCCCCGGTGCTGAAAGCGGCGGAGTGACTACTGCCGTTGTGGCAGCCAGTGAAGAACGACGCCGGAAAAACGGCGCTGTTGCCCTGCAGTGTGCTTACTGCGGAGAGCGCACCCGAAGCCGTGCTGAGTTGGAGGCTCACACTCGAGCCCATTCTGGTGCAGCGGCTGCTAGACACAAGTGTCTCATCTGTGATGAAGTACTGCCCTCTGCCGCGGTACTAGCCGAACATAAGCTGACACATTGCAAGgtTATATCGGGTGATACGTGTTCTCGGTGCCGAGCTCGTCTTTTATCTGAAGAGTCGTTCCTTGGTCACATGGCGCGACATCACCCAGCTTTGCCGGCGCCTTGTGTAGTGTGTCGTCAAACACTAGCGTCGGAAGCTGAGGCACGACTGCATGCACGTTTTCATCTGCGACCTGGGGAGGATGAGCAGAGATGTGCGATATGTCTCCGCGCACTACCAGAGGGTGAGGCTGGCGAGGGTGCTCGTGCTTGCTCAGCATGTTACGCTCGCCACGCAGCGCCGCGACCCCCACCTCCCGCCGACCACGACTGCCGCCTGTGTCGACGAGCACTCGGTTCTCCCACCAGACTGCAGGCTCACCTCATCGAACACACGTTTGCTGGCATTGGTGCCTTCACCTGCTACTTATGCTCAGCTGTATTCACAAGCGCGGCCGGCCTGCAACGCCACCTTCCCGAGCATGCCTCTGCCCCGCGACCTTACGACTGCGCGCGTTGTGGACTGAAATTCTTTTTCCGCGCGGAGCTCGACAACCATGCGTTTGTGCACCTTGAAGAGGCGGAGATAGCACAGAGGGCATTCTATGAAGCTTATGCTCGCGGTGCTGCGTCTGCGTGGGCTGCTTTGGCACCGCCAGAGCCTCAGACAACGCCGCCCCAAGCCGAGGTTAAACGTGAGCCGGAAATCAAAGAAGAGCGGGGAACCGACGAGTATATTGAAGTGTCGTCCCCTCCCCCCGCACCACCGCCGCCCGCTCCCCCTGCACCGCCGTCTCCCGCCCCCGTAGTAAAACAAGAGAAGCCAGACGAGGAGTAG
Protein Sequence
MLRQVLFAAETPPCLFISLARWCARVIRYCCFTCSVKCRSCETDNVPTEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGVDTAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQVDQPAPTDLSRRAPDEVPPVKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFSAPDDLQKHLLELHAHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGVGAGALRSEAEGAAHVRSRHAAAAPRCACGALLGSGVAARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGDLPRVKRMEASNGVEGGDDARSPCTPGAESGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVISGDTCSRCRARLLSEESFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGEGARACSACYARHAAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPQTTPPQAEVKREPEIKEERGTDEYIEVSSPPPAPPPPAPPAPPSPAPVVKQEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01437318;
90% Identity
iTF_00822228;
80% Identity
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