Basic Information

Insect: Spodoptera exigua
Gene Symbol: -
Assembly: GCA_011316535.1
Location: CM022064.1:2932810-2936907[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00036 0.029 15.2 3.5 2 23 170 191 169 191 0.97

2 12 4e-05 0.0032 18.2 0.9 1 23 195 217 195 217 0.99

3 12 0.00013 0.011 16.5 0.8 2 23 244 265 243 265 0.97

4 12 4.7e-06 0.00038 21.1 1.4 2 23 273 294 272 294 0.96

5 12 2.3e-05 0.0018 18.9 1.6 1 23 300 322 300 322 0.99

6 12 8.1e-06 0.00065 20.4 4.5 1 23 328 350 328 350 0.97

7 12 7.8e-08 6.2e-06 26.7 0.9 1 23 356 378 356 378 0.96

8 12 2.7e-05 0.0022 18.7 0.2 1 23 384 406 384 406 0.96

9 12 2.3e-05 0.0019 18.9 2.0 1 23 412 434 412 434 0.98

10 12 0.0084 0.67 10.9 5.1 1 23 440 462 440 462 0.98

11 12 8.4e-07 6.7e-05 23.5 1.0 1 23 468 490 468 490 0.99

12 12 2.5e-05 0.002 18.8 0.7 1 23 496 518 496 518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00036	0.029	15.2	3.5	2	23	170	191	169	191	0.97
2	12	4e-05	0.0032	18.2	0.9	1	23	195	217	195	217	0.99
3	12	0.00013	0.011	16.5	0.8	2	23	244	265	243	265	0.97
4	12	4.7e-06	0.00038	21.1	1.4	2	23	273	294	272	294	0.96
5	12	2.3e-05	0.0018	18.9	1.6	1	23	300	322	300	322	0.99
6	12	8.1e-06	0.00065	20.4	4.5	1	23	328	350	328	350	0.97
7	12	7.8e-08	6.2e-06	26.7	0.9	1	23	356	378	356	378	0.96
8	12	2.7e-05	0.0022	18.7	0.2	1	23	384	406	384	406	0.96
9	12	2.3e-05	0.0019	18.9	2.0	1	23	412	434	412	434	0.98
10	12	0.0084	0.67	10.9	5.1	1	23	440	462	440	462	0.98
11	12	8.4e-07	6.7e-05	23.5	1.0	1	23	468	490	468	490	0.99
12	12	2.5e-05	0.002	18.8	0.7	1	23	496	518	496	518	0.98

Sequence Information

Coding Sequence: atgGCTTCTGAAGAAAATACGAACACAACAGACACAAAAAATTACGATGCTTGTTGTCGCACTTGTTTGAAAGAATTTCAAGATGATAATTTGAATGATATATTTGAACCTAGGTCACACAGGCTAGACATGcctagaataatatttttgtgtaccaCAGTAAtgatcaCGAAACAAGACGTCCTTCCAAAGAAAGTATGCAACAGTTGCTACGACTTCTTACTGAGCTATCATGAATTTAGACACAATGCCATAAATTGTGCTATTGAACTTCAAGACTATTTAGATAAAACTGGCATAAAATCAGAGGACGAGGATGTTGGGATAGAACTCGACGGTGATAATAATCAATATCAGACTGAAAATTTAAATGCGGGTGTGGATCATAATTTTGATTCCGAGATGGCAGTAACTGAGGAAACTAATGCATACTCTGATATAGCGGCTTTATTCTCAGAAATATCAGATGTTAACCAACTTAATGAAgaacaattaaattatgtagTAACATGCAATATTTGCAGCAAAGAGTTTACATCCCTTGACAAACTACACAGCCATAAGAAGAGACATGAAATAACATATACTTGTGAAGTATGTTctcaagtttttatttacaattataaatatatggAACATATGATGACACACAGGCCTACTGTAGATATGCCACCCGATACTGAAACAAATACTGAAATAAACCACAATTCCGAACAGTTACCGACACTCCGTTGTGAAATTTGTTCCGAAACATTCAGATCCATTAACTCTCTATCGGCACATAAAAGAAAACACACACCAAAAGACAGAGTGCTATCCTGTACAATATGTGGCATAGTGTTCAAAAAGCTGTCTCATTTAAAACGTCATGAACTGAGTCACGGTATCAATAAACCATTTAAATGTACTACGTGTCAAAAGTCATATGCAACAGAATCTGCATACTCAGATCATATGAATAAGCATAAGGGGATAATGCCGCACTGCTGTCCAATATGTGCGAAGGCCTTCACTCATCTCTCAAGTTTAAAAACACATATACGGGTTCATACTAAAGAAAAGCCTTACTTATGTCCTACTTGCGGGAAGACATTCGACTCAAGTACTAATTTGAATCAGCACATGAATAGACATCAAGGTTTGAAATCATTTGCTTGTAATTTGTGTCCTAGGAAGTTTGTCAGTAAAGGGGAATTAAAATCTCATGTTGTAACCCACACTGGTGTGAAGTCATATTCGTGTGACCAGTGCAATGCATCATTCACTAAGAACAGCTCTTTAACCACACACAAGCTCCGCCACTTGGGCATCAAGCGCTACCAATGTGATGCTTGTCCTATGAAGTTTACTTGCAAAGATCACTTAAAGAGACATAACAGAATACACACGGGAGAGAGGCCCTACAAATGTGACATATGTGAACGTGCGTTTACCCAGAGCAATGACTTGGTCAAACACAAGCGTTCACACCTCGGCAATAATTTGTACAAATGCGAGCAGTGCCCACAAAGCTTCAGACTGCTAACAGAACTTCGGCAACACATGTCAGAACACTTCTTATCCGCACGACTTGAGGCGTTGAATTTTAATAACACGGATAATAACAATAGTCAGCCAATCGGTAACATTCAACCAGTTGACATAAGTCAACCAATTGACATAAGTCAACCCATTGACATAAGTCAACCAGTTGACACAAGTCATCCAGTCGACAATGAGCCTATGACTGATCTACCTCAAGAACCAGCTCATGGTGATGGTAACGAGAATGAACTATAA
Protein Sequence: MASEENTNTTDTKNYDACCRTCLKEFQDDNLNDIFEPRSHRLDMPRIIFLCTTVMITKQDVLPKKVCNSCYDFLLSYHEFRHNAINCAIELQDYLDKTGIKSEDEDVGIELDGDNNQYQTENLNAGVDHNFDSEMAVTEETNAYSDIAALFSEISDVNQLNEEQLNYVVTCNICSKEFTSLDKLHSHKKRHEITYTCEVCSQVFIYNYKYMEHMMTHRPTVDMPPDTETNTEINHNSEQLPTLRCEICSETFRSINSLSAHKRKHTPKDRVLSCTICGIVFKKLSHLKRHELSHGINKPFKCTTCQKSYATESAYSDHMNKHKGIMPHCCPICAKAFTHLSSLKTHIRVHTKEKPYLCPTCGKTFDSSTNLNQHMNRHQGLKSFACNLCPRKFVSKGELKSHVVTHTGVKSYSCDQCNASFTKNSSLTTHKLRHLGIKRYQCDACPMKFTCKDHLKRHNRIHTGERPYKCDICERAFTQSNDLVKHKRSHLGNNLYKCEQCPQSFRLLTELRQHMSEHFLSARLEALNFNNTDNNNSQPIGNIQPVDISQPIDISQPIDISQPVDTSHPVDNEPMTDLPQEPAHGDGNENEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -