Sexi005426.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spodoptera exigua
Gene Symbol
-
Assembly
GCA_011316535.1
Location
CM022049.1:8126846-8143367[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.9e-05 0.0047 17.7 0.1 3 23 134 154 133 154 0.97
2 12 5.3e-07 4.2e-05 24.1 1.2 1 23 160 182 160 182 0.99
3 12 3.3e-06 0.00026 21.6 2.7 1 23 188 210 188 210 0.99
4 12 2.1e-07 1.7e-05 25.4 1.5 1 23 225 247 225 247 0.99
5 12 9.3e-05 0.0074 17.0 2.8 1 23 253 275 253 275 0.98
6 12 0.021 1.7 9.6 1.8 1 23 282 304 282 304 0.98
7 12 3.6e-07 2.8e-05 24.6 2.3 1 23 310 332 310 332 0.99
8 12 0.025 2 9.4 1.8 1 23 339 361 339 361 0.98
9 12 1.5e-06 0.00012 22.7 1.5 1 23 367 389 367 389 0.99
10 12 0.0012 0.094 13.6 0.3 1 20 395 414 395 417 0.93
11 12 1.9e-05 0.0015 19.2 1.3 2 23 424 445 423 445 0.96
12 12 1.8e-06 0.00014 22.5 1.3 1 23 451 474 451 474 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAAATCAAAGCTGAACCTATGAGTTTTTACACATCTCACCCACACGTACATACCGGTCCCCCAACAATAATACGTTCAGATTCAAGTCATGcatcaattatttcaatgaacCAACATCACCAAGCACACCAAGAGGATTCTAAAGATAGCCTCATAGTACAACAGCAAGTACAACATCAGCAAGATCTCATGGAACAACACCAACAACAACAAGAAATGCAACAAGACGATGAGTTGAGCTTTAAAGGCATGGAAGATGAAGGAGTTGATATGGACATGGACGGACGACAGTGCCCTCAGGGTATGGGGGTGGACATGGGATCAGTTCAAACTAAAATGGAAGTGGCAAATGGTGGTCAATCGACACCACGGTCTAAACCTCAGGCCTGTAAGGTCTGTGGCAAAGTACTGTCGTCAGCTTCATCTTACTATGTTCACATGAAGCTGCACTCAGGAAACAAACCCTTTCAGTGCACAGTTTGCGACGCAGCTTTTTGCCGTAAGCCCTACCTAGAAGTGCATATGCGCACACATACAGGCGAGCGCCCCTTCCAGTGTGATCTCTGCCTCAAACGATTCACGCAGAAATCCAGTCTCAACACGCACAAACGTGTTCATACAGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACACAGAAATCCAGTCTCAACATCCACAAGCGGACGCATTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAACGAACGCACACAGGTGAACGTCCGTATGCTTGTGATATTTGCCAAAAGCGCTTTGCTGTGAAGAGCTATGTAACTGCGCACAGATGGTCGCATGTAGCCGACAAGCCGCTGAACTGCGACCGTTGCTCGATGTCGTTTACATCGAAGTCTCAGTTCGCCTTGCACATCCGCACGCACTCTACCGGCTCCTGCTACGAGTGCAGTGTCTGCGGCCGCTCCTTCGTTCGAGACAGCTATCTGATAAGACACCACAACCGTGTCCATCGCGAGAATCATAGCAATGTGTCGGCTAACAGTATCGGCACCATCAACAGTGTTGCTACCAACACCAACAACTCTAACAACAGCAACTTTGATTCCCCCGGCGTTTGTGACTTAAGCTTTGTACCAATGGTAAATCGCTACATGACATCTCAAGGAACTCAAGTCTCCATGCAAGATACGAGCAAAATGTCTGCGATGTCGCCCCAGTCTATTGCATCTATTTCGTCACCTCCTCCTTCGCATACACCAACGCCGCAGCCCCAGATGTCCGGTCAAATGCATCTTGCAGATTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHVHTGPPTIIRSDSSHASIISMNQHHQAHQEDSKDSLIVQQQVQHQQDLMEQHQQQQEMQQDDELSFKGMEDEGVDMDMDGRQCPQGMGVDMGSVQTKMEVANGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMSFTSKSQFALHIRTHSTGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTINSVATNTNNSNNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPSHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00784581;
90% Identity
iTF_00824064;
80% Identity
-