Sexi004285.1
Basic Information
- Insect
- Spodoptera exigua
- Gene Symbol
- -
- Assembly
- GCA_011316535.1
- Location
- CM022062.1:9946739-9962782[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.7e-05 0.0029 18.3 6.9 1 23 194 216 194 216 0.98 2 13 9e-07 7.2e-05 23.4 0.5 3 23 230 250 228 250 0.96 3 13 5.7e-05 0.0045 17.7 2.0 2 23 259 280 259 280 0.98 4 13 0.00055 0.043 14.6 1.6 3 23 288 308 286 308 0.95 5 13 4.7e-06 0.00038 21.1 1.5 1 23 314 336 314 336 0.98 6 13 9.9e-06 0.00079 20.1 8.5 2 23 343 364 342 364 0.97 7 13 4.3e-06 0.00034 21.2 1.2 1 23 370 392 370 392 0.98 8 13 8.5e-06 0.00068 20.3 1.3 1 23 398 420 398 420 0.99 9 13 0.00038 0.03 15.1 3.2 1 23 426 448 426 448 0.98 10 13 0.0021 0.17 12.7 2.3 1 23 454 476 454 476 0.98 11 13 2.7e-06 0.00021 21.9 0.4 1 23 482 504 482 504 0.98 12 13 2.2e-05 0.0017 19.0 1.3 1 23 510 532 510 532 0.98 13 13 0.0006 0.048 14.5 2.9 1 23 602 624 602 624 0.97
Sequence Information
- Coding Sequence
- ATGGCTGCCCCCAATAAACCATTGAAATTCGACAAAATATGTCGTGCTTGTTTAGAGATAAAAAAGGACATGAGACCCCTGTTTGAGCAACTCACGGCTACAATGTTGATGGGCATAACGAAAGTGCAGgTGGCAGTGGGCGATGGTCTGCCTGCACAGCTGTGTCTGCAATGTGTGCACCAGATATCCCGGTGCCACGCCTACAAGGACCTCGTCGAGAGAAACGACATCGTGTTGCGGGAATATGCCGCGCGTATGCAGGAAGAGGTGTTcaaaagagagagagaagagAAAGAAAAGTTGCTGAACATGAACTGCCAGGACACGTACATGCAATATATGGAGGTGCCGCTGACGAATGCCAACCAGATTCTGGACGGTTTCTTTGCCGGAACGCCAGAACAAACGCCGACAAATgccccagagcaggagacgAAAATTGAATTCGTTGAAGTGgaaaaaGCAGAAACAACTTCGCCTGAGAATCAAGCAAAGGACAAAGAAGGTCTAAATTCAGACGAAGAGAATTATCTTCAGATGGTTTTGTTTCAAGCGACGGCCACGATGCCTCCCGGGCGCCATGTTTGCAACCTCTGCCATAAGGAGTTCAAGCACGCTCGGTGGCTCAAACAACACATGCGCTCGCACACCAACTGGATCAAAGCTAATTGTAAAAAGCCACATTTGTGCCCGATTTGTGATAGGGTTTTTAAGGGTCCGGGTATGTTGAAAATGCACATGCGTACGCACGAACAGCGGCCAGCGAAGCAGCCAACGTGTTCAGTGTGCCAGCGGACGTTCCCCAGCAAGACGTTGCTGTACCGGCACCGGCAGACTCACTTCGAGCAGAAGACCCACCTGTGTTCTGTCTGCGACAAGCGGTTCTTCAGTGGGTACGCCCTGCGGTCCCACATGGCGCGACATCGCGGGGAGCGGCCCTACGTGTGTACCACGTGCAACAAGAGCTTCTACAACCCTACTGATTTGAAGGTTCATTTTCGTTTGCACACGGGCGAGAAGCCCCTCAAGTGTAATGAGTGCAACAAGACGTTCCGGCGTCACTCGACTCTGTGCCAGCACATGAAGAAGCACCGCGGCATACGGAACCACGTGTgcaatgtatgtaataaaaGCTTCTATGAAGTGTCCAAGCTCAACGCACATATGAGGATCCATACTGGAGAGAGGCCATACGAGTGTCAGTTCTGCGACCGTCGTTTCGCGCAGAAGTCTGCCCTGATCTACCACAGCCGGACTCACACGGGGGAGAAGCCGTACTGCTGCAAGGTCTGCTCCGCCAGGTTCACCACATCCTCCGCCAGGAACAACCACATGCTTACACATACTGGAAACAAGAAGTTCGTGTGCACAATATGTATGAAGGGCTGCACGTCCCGGTCGGAGCTCCGCGTGCACACGAGCAAGCACACGGGGGACAAACTGTTCCCCTGCGACCAGTGCGGACAGAGGTTCAGCTCGGCCTCCTACCTCGCCGTGCATCGCCGGTACCATACCGGGGAAAAGAAGTACCACTGTCCTGTCTGCGGGAAAGGTTACGTAGAATCTAGTTCATACAAGAAACATGTGAAGTCCCACGGCGCGGCGGCCGCTAAGTCGGAGAGCTCCTCGTCCGCGTCGGAGCCCCCGGAGCACCCCGAGCCGGCCGTGGAGCGCCCCGCTGATATACCGCCTCCAATCGCTGAGGAGTCTACTGAGGAACAAAACCAAGGTCAAGTAGAGATCCAAGTGCATGAGCCCCAGCAGGTAACGCCGCGGGGACGCTCGCTGCAGAAGCTGTTCCGGTTCAAGTGCGCCTTCTGTCCCAAGACCTACATGTACCTACACAACCTGAAGAAACACACCGCCGTGCACTCGGAGgaAATGAATCGAAACGCCGAACAAATCATTCTAATGCAGCAACCGcaacagcaacaacaacaacaacaacaacagcaacaaCAAGTGCAAGTCCAGCAACAACAGATGCAGCAACATCAAGTGCAACAACACCAAGTACAACAACAGGTCCAGCAACAGGTGCAACAGCAAGTTCAGCAACAAGTACAGCAACAGGTGCAACAACAGGTGCAGCAGCAGGTGGCGGCGCAGCAGGTGCTGCAGGTGGGCGGCGTGCCCCCGCTGGCGCTGCACGCGCAGGGCATCGTGCAGCCCCTACAGACCCAGCACCCGTACCCGGTGATATCATCAGTGCAGTCTCTACAACTGCAGCAAAGTCAGCAGCAACAGCCGCAGCAACTTCAAGTACAAACAATACAGatacacccacaacaccagccCATACAGATACATGCGGTGGGCGTCCAGCAGGTACAGCAGCAACAGTTGCACGTGGCCACATCGTCCTGCCAGACCATGCTGCCAAACATACTGCAGTTACAGCCGGCGACGGTGGCAGTGTCGGGCCTGTCCCAGCAGGAGCTGGGCGGCGTCACGCACCGCATCATCCTGCAGCCGCAGCCCTCCGCCGGCCACCCCGCTGTCTACACCATACACCACTGA
- Protein Sequence
- MAAPNKPLKFDKICRACLEIKKDMRPLFEQLTATMLMGITKVQVAVGDGLPAQLCLQCVHQISRCHAYKDLVERNDIVLREYAARMQEEVFKREREEKEKLLNMNCQDTYMQYMEVPLTNANQILDGFFAGTPEQTPTNAPEQETKIEFVEVEKAETTSPENQAKDKEGLNSDEENYLQMVLFQATATMPPGRHVCNLCHKEFKHARWLKQHMRSHTNWIKANCKKPHLCPICDRVFKGPGMLKMHMRTHEQRPAKQPTCSVCQRTFPSKTLLYRHRQTHFEQKTHLCSVCDKRFFSGYALRSHMARHRGERPYVCTTCNKSFYNPTDLKVHFRLHTGEKPLKCNECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKSFYEVSKLNAHMRIHTGERPYECQFCDRRFAQKSALIYHSRTHTGEKPYCCKVCSARFTTSSARNNHMLTHTGNKKFVCTICMKGCTSRSELRVHTSKHTGDKLFPCDQCGQRFSSASYLAVHRRYHTGEKKYHCPVCGKGYVESSSYKKHVKSHGAAAAKSESSSSASEPPEHPEPAVERPADIPPPIAEESTEEQNQGQVEIQVHEPQQVTPRGRSLQKLFRFKCAFCPKTYMYLHNLKKHTAVHSEEMNRNAEQIILMQQPQQQQQQQQQQQQQVQVQQQQMQQHQVQQHQVQQQVQQQVQQQVQQQVQQQVQQQVQQQVAAQQVLQVGGVPPLALHAQGIVQPLQTQHPYPVISSVQSLQLQQSQQQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVAVSGLSQQELGGVTHRIILQPQPSAGHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094252;
- 90% Identity
- -
- 80% Identity
- -