Basic Information

Insect: Spodoptera exigua
Gene Symbol: -
Assembly: GCA_011316535.1
Location: CM022070.1:5220420-5231587[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.0034 0.27 12.1 0.2 1 23 47 70 47 70 0.96

2 27 0.32 25 5.9 0.1 2 23 97 118 96 118 0.96

3 27 0.0064 0.51 11.3 1.3 1 23 140 162 140 162 0.99

4 27 3.4e-05 0.0027 18.4 1.0 1 23 166 188 166 188 0.98

5 27 0.016 1.3 10.0 0.3 1 21 222 242 222 245 0.89

6 27 0.0062 0.49 11.3 0.6 1 23 252 275 252 275 0.95

7 27 0.39 31 5.6 0.1 1 17 282 298 282 299 0.91

8 27 0.86 68 4.6 0.3 1 23 333 355 333 355 0.93

9 27 2.1 1.6e+02 3.4 0.1 3 23 380 401 379 401 0.96

10 27 0.00052 0.041 14.7 3.5 1 23 423 445 423 445 0.98

11 27 0.00032 0.025 15.3 0.3 3 23 451 471 449 471 0.96

12 27 0.0017 0.13 13.1 0.8 1 23 479 502 479 502 0.94

13 27 3.1 2.5e+02 2.8 0.2 1 9 508 516 508 521 0.88

14 27 0.014 1.1 10.2 1.1 1 23 568 591 568 591 0.94

15 27 0.01 0.8 10.6 0.1 2 23 614 635 613 635 0.96

16 27 0.00038 0.03 15.1 3.5 1 23 657 679 657 679 0.98

17 27 0.003 0.24 12.3 0.1 1 21 683 703 683 704 0.94

18 27 0.003 0.24 12.3 0.6 1 23 761 783 761 783 0.93

19 27 0.23 18 6.3 0.2 1 23 972 995 972 995 0.93

20 27 0.24 19 6.3 0.5 3 23 1021 1042 1020 1042 0.96

21 27 0.032 2.6 9.0 0.1 1 23 1066 1088 1066 1088 0.97

22 27 0.00015 0.012 16.4 0.2 1 23 1092 1114 1092 1114 0.98

23 27 0.00012 0.0092 16.7 0.4 1 23 1119 1142 1119 1142 0.96

24 27 0.025 2 9.4 0.2 2 23 1149 1171 1149 1171 0.92

25 27 0.052 4.1 8.4 6.4 1 23 1178 1201 1178 1201 0.96

26 27 0.00011 0.0084 16.9 6.8 1 23 1207 1229 1207 1229 0.97

27 27 0.00021 0.017 15.9 1.7 1 23 1235 1257 1235 1257 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.0034	0.27	12.1	0.2	1	23	47	70	47	70	0.96
2	27	0.32	25	5.9	0.1	2	23	97	118	96	118	0.96
3	27	0.0064	0.51	11.3	1.3	1	23	140	162	140	162	0.99
4	27	3.4e-05	0.0027	18.4	1.0	1	23	166	188	166	188	0.98
5	27	0.016	1.3	10.0	0.3	1	21	222	242	222	245	0.89
6	27	0.0062	0.49	11.3	0.6	1	23	252	275	252	275	0.95
7	27	0.39	31	5.6	0.1	1	17	282	298	282	299	0.91
8	27	0.86	68	4.6	0.3	1	23	333	355	333	355	0.93
9	27	2.1	1.6e+02	3.4	0.1	3	23	380	401	379	401	0.96
10	27	0.00052	0.041	14.7	3.5	1	23	423	445	423	445	0.98
11	27	0.00032	0.025	15.3	0.3	3	23	451	471	449	471	0.96
12	27	0.0017	0.13	13.1	0.8	1	23	479	502	479	502	0.94
13	27	3.1	2.5e+02	2.8	0.2	1	9	508	516	508	521	0.88
14	27	0.014	1.1	10.2	1.1	1	23	568	591	568	591	0.94
15	27	0.01	0.8	10.6	0.1	2	23	614	635	613	635	0.96
16	27	0.00038	0.03	15.1	3.5	1	23	657	679	657	679	0.98
17	27	0.003	0.24	12.3	0.1	1	21	683	703	683	704	0.94
18	27	0.003	0.24	12.3	0.6	1	23	761	783	761	783	0.93
19	27	0.23	18	6.3	0.2	1	23	972	995	972	995	0.93
20	27	0.24	19	6.3	0.5	3	23	1021	1042	1020	1042	0.96
21	27	0.032	2.6	9.0	0.1	1	23	1066	1088	1066	1088	0.97
22	27	0.00015	0.012	16.4	0.2	1	23	1092	1114	1092	1114	0.98
23	27	0.00012	0.0092	16.7	0.4	1	23	1119	1142	1119	1142	0.96
24	27	0.025	2	9.4	0.2	2	23	1149	1171	1149	1171	0.92
25	27	0.052	4.1	8.4	6.4	1	23	1178	1201	1178	1201	0.96
26	27	0.00011	0.0084	16.9	6.8	1	23	1207	1229	1207	1229	0.97
27	27	0.00021	0.017	15.9	1.7	1	23	1235	1257	1235	1257	0.98

Sequence Information

Coding Sequence: ATGCGCAGGCGGCGACGGGCAAACAACCAGCTCCCCGAGGAATCGGAGAAAAGAATATCGAAAACCATGATGCGTCGTAACGCCATGATCTTACTCGAATGTTCCACAGCTTGGGCCTTTAGATGGTTCCATAGCGCCTTCTTTTGTTCCTACTGCGACGCAAAGTTCGTCGACGTCCCCCTCCTACGCACACATGTTAAAATTAACCACCTAAACGAATCTCCAACTGATAGAATTTTCTCGAAACTCACTGAAAATAATATGGTGAAGGTTGATGTGGCTGAACTCAGCTGCAGGTTATGTAGCAGAATTTTAAACAGTATAGATGCCTTAAAAGACCACCTCTTGATACACGGAAAAACTTTAAACGTAGAATACAGCGACGGTGTCTTACCATTTAAGCTGGACGAGGAAGCATTTACCTGCCAAATGTGTTTTGAACCGTTTCAAACTTTCGCGAAAATGAACGAGCATATGAATACTCATTTCCAAAATTATATCTGCGATTCTTGTGGGAAGGCCTTTGTCTCGAAATCTAGATTTAGGAAACATGTACAGTCACATGAGAAGGGTAGCTTTCCTTGTGGAGAATGTGATGAAATATTAGAAACTAGGGCGTCTCGAATGTGTCATCGAATGAAGGTCCATAGAAAAGGGATCCGTTACGCTTGTCCTAGATGCCCTGAAGTGTTCTCTACATATCACGCCAGAGCTAAACATTTAGTAGACACGCACGCTCAACAGAAAAAGGAATACTTCTGTAACGCTTGCGATAAAAGTTTCGAGTCTAGCTCAAAAAGGGCGGGGCATATACGTTTGACGCACGCGAATATTGAAAAGCGGCATTACTGTCCAAATTGTCCTTCGGTATTTGTTAggCGCATCGATCTCAAAGTAAAATGGCGGCCGAAACGCAAGTATAACGATCACAGAGATAACGCTGCAATTATACTAGAATGTTCGAATGCTTGTCCGTTTAGATGGAAACGGGGGGCATTCACTTGCGCGTTTTGCCCTCTCTCATTTGGCGAGTTTAGTGGAGTTAAAACCCATTCTATGGAACATCCCAATAAAGTAGAAGCTTTACGCCTAGCTAGAACCTTCGCCAACGTAAAGGCTGAAGTCACTAACCTACTATGCGAACTTTGTCAAACGCGTATGACAGATCTGGACGCCCTTAGCGACCACCTAATCTCAGTACATAATAAGCCTATAATAACTAAGCATGGTTTAGGAGTAACACCTTTCTATTTATCAGGAAAAGAATTCAATTGTACGCATTGTGATGAAACTTTTGAACTGTTTTCGAAATTGAATACACATTTGAACACGCATTATCCTAACAGCATCTGTTTTCAATGCGGGAAAGCGTTCTCTTCTATTAGCAGGTTGAAATCTCATTTAATCATACACGATCCAGAAGCCGCATCCCAATACAAATGTACAAAATGCGATCAAGTTTTCCCCACCCGTGTATTAAGAAATAGTCACATTACTTTAACACATGGACCTGAAAATAGGTACAGATGTCCTTACTGCAgAAGAACAATCATTCAAGTGGACTCCAATTCAGAGAATAAAGTGCCAGAGGAAACTATTGCAAAAATAAGAGGAAGACAAAGACGAGCTACGTTCAGAAATAATATTGCTATCATCATGAGGACAAGCACAGCTTACCCCTTTAAGTATACGAAAGGAGCGTACCTCTGCTACTTTTGCACCAAAACGTTTATAGAACCAGAGAAATTGAGAGAACACAATCAAACGAATCACTTTGTtgccaaaaataatttgactCTAAGAAAATATGAACCAATCAAAATGGATTTTGAAATGACTGTCTGCAAAATTTGCGATACTCGAATCAATGATTACGCTGAATTAAAAGAGCATTTAGTTACTCATGGAAAGACTATAGACTGTACCTTCGAAGATTGTGTTATGCCGTACAAACTAAACAGGGAAGAGTATAACTGCCAAGTTTGCGGGAAAACTTACGAAAAGTTTTTGAGTTTGCACAAACATATGAATACTCATTACGAACATCATATTTGCGAGACTTGTGGCAAAGCATTTGCAACCTACCAACGGTTGGTCAGCCATATTAAAGgtGAAGCACAAACAGGCACAGAACGCCTTGTAGAGACTAGAGCTGAAATCCGGGCGAAAATAGCTGAAACAAAGAGAAATTTTACAGACGACTTAAAAGCTAGAACGAGACATGCGACCATACTATTGGAGTTCACAAGAATATGCCCTTTTAAATGGATGAAAAATCTCTATATGTGCTTCTATTGCCACCAACAATACTCCGATCCAGCGGCTTTGAGAGCCCACAATGAAGAACACAGCTTTCTTACGacttcacaaataaaatacgCACTATCCAAGCTTAAGAAGTACGAACTAGTCAAAGCTGATATCACTGATGTGGGTTGCAAGCTATGCGACGACTTCATACCAGATTTTCCCACCCTAAAATGGCATCttttagaaaaacataaaaaacatttagacCCTAAATCTGCAGATGGCGTTCTCCCATTCAAAGTAACATTGGACAATTTCTCCTgttcAGAAACACCATTTCCTGAAATGAGACGAAGAATTGTCCCGCTATTTCAAGTAGCTTACGACAGGAGTTTATGTAGACCTCTTGGAACACTTATAGACTTCAGTAGATTTAGAAAGAACACCGTTAAATCATTGTCGCCACCGCCACGTGAATTTTCACCTGAACGCAGTCCATCGCCGGTTTCCTTCACTAAAGAACCATCTCCTTTTATACCTAGCACGCAATCGTTACCCGTCCAAGAGAAAACTGTAGCCAAAAAGAATCCAGATGTTAGACAAAACGCTTTAGCTGTCTTCGAATTTTCAACCGTATACCCATTCGTGTACAGCAGTAATAAATTCAAATGCTTCGTTTGTTCTCAACCATTTTTGGAACTTAAAGATCTGAAAATTCACATGGCTGCAACACACAACTTCGCCCCACTTAAAAGGCTAGTTAATAACCGTAGAGAGAACATACTAAAAGTAGATGTAAGTGATATTCTTTGCAAAATATGTTCAGAAAGACAAACTAATCTGGTCGAATTAAAGAAACATCTAAAGGAAATTCATAATAAACCACTGAATTTAGATATACAAGACAATATGATACCATTCAAACTTGAATTAGACGAAGATGGTTACAAGTGTGTAATTTGCGAACGAAATTTTATCAAAGTTAGGGTTTTAGTCATTCATATGAGCGAGCATTTTAACAACTATAGCTGTGAGATTTGTGGTTCAGTCTTCATGACTTTACGtctcttaaaaaaacatttggaaGTCCACGAttccggcaattatccctgcgACAGATGTAACAAAGTTTTTAGCACTCCCTATAAAAGAACTCTGCATATAAGAGGTGTGCACTTAAAACAGTGTCCGCGACGATGTCCTATGTGTCCAGAAAAGTTCAATTCGAATTACAAACGTGCTATTCATTTGCAAGATGTCCACAATCAAGAGACGAAGGTCCATAAATGTAAGACTTGCGGAAGAGCGttcaatttgaaatatcatTTGGTTTGTCATGTCCGTTCTGTTCATCTGCAGGAGAGGAATCATCAATGCGATGTCTGCCATCAAAGATTCTGTAATAAGGAGTCTTTGAAACGGCACATGGTGATTCACACTGGCGAGAAAAACCATAAATGTGATGTTTGCGGTATGGCGTTCTTGAGGCGGAAGAATTTAAAAGATCATTTGCGTTTACATGATATTAGGCATATCACCCGTAACGAGGACTCAATGGAGCGACTGGTAGTGCAAGGGAAAGTTGAGGGCAAACGATCACATGGACGCTCTCCAACACGGTGTATAGACCTCATCAATTCGGTGACGCATTGCAGCGTCAACGAAAACTCCCAAGCCGCCAAACATAGAAGTTCATGGCGTCGCATCGCAAGAGAGGCGGTGGCGCAAGACTCGACCGACACCTGA
Protein Sequence: MRRRRRANNQLPEESEKRISKTMMRRNAMILLECSTAWAFRWFHSAFFCSYCDAKFVDVPLLRTHVKINHLNESPTDRIFSKLTENNMVKVDVAELSCRLCSRILNSIDALKDHLLIHGKTLNVEYSDGVLPFKLDEEAFTCQMCFEPFQTFAKMNEHMNTHFQNYICDSCGKAFVSKSRFRKHVQSHEKGSFPCGECDEILETRASRMCHRMKVHRKGIRYACPRCPEVFSTYHARAKHLVDTHAQQKKEYFCNACDKSFESSSKRAGHIRLTHANIEKRHYCPNCPSVFVRRIDLKVKWRPKRKYNDHRDNAAIILECSNACPFRWKRGAFTCAFCPLSFGEFSGVKTHSMEHPNKVEALRLARTFANVKAEVTNLLCELCQTRMTDLDALSDHLISVHNKPIITKHGLGVTPFYLSGKEFNCTHCDETFELFSKLNTHLNTHYPNSICFQCGKAFSSISRLKSHLIIHDPEAASQYKCTKCDQVFPTRVLRNSHITLTHGPENRYRCPYCRRTIIQVDSNSENKVPEETIAKIRGRQRRATFRNNIAIIMRTSTAYPFKYTKGAYLCYFCTKTFIEPEKLREHNQTNHFVAKNNLTLRKYEPIKMDFEMTVCKICDTRINDYAELKEHLVTHGKTIDCTFEDCVMPYKLNREEYNCQVCGKTYEKFLSLHKHMNTHYEHHICETCGKAFATYQRLVSHIKGEAQTGTERLVETRAEIRAKIAETKRNFTDDLKARTRHATILLEFTRICPFKWMKNLYMCFYCHQQYSDPAALRAHNEEHSFLTTSQIKYALSKLKKYELVKADITDVGCKLCDDFIPDFPTLKWHLLEKHKKHLDPKSADGVLPFKVTLDNFSCSETPFPEMRRRIVPLFQVAYDRSLCRPLGTLIDFSRFRKNTVKSLSPPPREFSPERSPSPVSFTKEPSPFIPSTQSLPVQEKTVAKKNPDVRQNALAVFEFSTVYPFVYSSNKFKCFVCSQPFLELKDLKIHMAATHNFAPLKRLVNNRRENILKVDVSDILCKICSERQTNLVELKKHLKEIHNKPLNLDIQDNMIPFKLELDEDGYKCVICERNFIKVRVLVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNYPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRAIHLQDVHNQETKVHKCKTCGRAFNLKYHLVCHVRSVHLQERNHQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDIRHITRNEDSMERLVVQGKVEGKRSHGRSPTRCIDLINSVTHCSVNENSQAAKHRSSWRRIAREAVAQDSTDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -