Sexi019252.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Spodoptera exigua
Gene Symbol
-
Assembly
GCA_011316535.1
Location
CM022063.1:11309167-11322887[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 7e-05 0.0056 17.4 2.2 1 23 437 459 437 459 0.97
2 20 0.0037 0.29 12.0 0.6 1 20 465 484 465 487 0.94
3 20 1.8e-05 0.0015 19.2 5.6 1 23 506 528 506 528 0.98
4 20 8.5e-05 0.0068 17.1 4.1 1 23 534 556 534 556 0.99
5 20 3.3e-05 0.0026 18.5 5.3 1 23 562 584 562 584 0.97
6 20 4.6e-06 0.00037 21.1 8.4 1 23 590 612 590 612 0.97
7 20 6.3e-07 5e-05 23.9 2.9 1 23 618 640 618 640 0.97
8 20 8.9e-05 0.0071 17.1 6.7 1 23 646 668 646 668 0.97
9 20 8.8e-05 0.007 17.1 6.5 1 23 674 696 674 696 0.97
10 20 4.3e-07 3.4e-05 24.4 1.9 1 23 702 724 702 724 0.98
11 20 4.4e-05 0.0035 18.1 7.9 1 23 730 752 730 752 0.98
12 20 2.3e-05 0.0019 18.9 6.4 1 23 758 780 758 780 0.98
13 20 1.7e-06 0.00014 22.5 4.2 1 23 786 808 786 808 0.98
14 20 5.8e-06 0.00046 20.8 5.0 1 23 814 836 814 836 0.96
15 20 1.9e-06 0.00015 22.4 5.0 1 23 842 864 842 864 0.98
16 20 1.1e-05 0.00085 20.0 5.8 1 23 870 892 870 892 0.98
17 20 5.2e-05 0.0041 17.8 7.9 1 23 898 920 898 920 0.97
18 20 4.9e-06 0.00039 21.0 3.1 1 23 926 948 926 948 0.96
19 20 0.00064 0.051 14.4 0.3 1 23 955 977 955 977 0.96
20 20 0.047 3.8 8.5 4.7 1 23 989 1011 989 1011 0.99

Sequence Information

Coding Sequence
ATGAATCAGGAACACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAAGTTCAGAGTCACAGGGGCAAAGAGTTCAAGCCACACAGCAACAACAGCAGAATAACTTGCCAGCCACGACATCTGCCACTGATTTACGAGTGAATTCTGCCGCAGTGAATGTCGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTATTCCCCGGGCCGATACCCCAAGTGTCTGTGTATGGATTGCCTGCCGGTGCAAGGATAGAAAACGGAAAACCTGTACAGGATCTTGGGCAAGCACATGCCAGTATACTGAATGGTGATCCCAATATTATACTTGGGCATCATGCAGGCCAATCTCAAGTCACAGTGTCAGCTCCAGGTGGCCAACAGATTCCAGTCTCACAAATTATTGCCACACAGTCTGGGCAAACACATGAAGCTCTTGTGGCTCATAATCAGCAGCAGGCTGAGTTGGCAGCCGCCCAAGCACAGGCTCAAGCGCAAGCATCCAACAGCAATGCGCAGGTGTCAGTTAGTGCAGGGCAGGCCACTCACCAGCAGGTACCCAATAACCGGGTCGAATTTGTTCAACACCATAACATTGATATGGTAAATCACGTGggtCATCATTCACAGCAACACATAATGCAACAGCAATTGATGGCTACAGCGCGACCAGAACACAGTAATCAACAGatTCAACTGACGGTGAGCGAGGATGGCATAGTAACTGTGGTGGAGCCGGCAGGCACGAAAATGGTTGACAAGGAAGAACTACACGAAGCCATCAAGATGCCTAATGACCATACACTTACTGTACATCAATTACAACAAATAGTGGGACAACagGTAATAGACAGTGTAGTACGCATAGAACAAACAACCGGTGAGCCAGCAAACATCCTTGTTACTCACAATCCTGATGGCACGACTTCAATAGAAGCCAGTGCTGCAGACCCACTCATTGTCAAAGACGAAAAGAGTGGCAACAAAATAGATCCAACGCAATTCGCTATTCCTACTGACATAAAAGACATAAAGGGAATAGATTTAAAGaATGTAGGAACAATGGGTATGGAGGGGGCAGTTGTGAAGATCTCCGCCGGCGCAGCGGAACACGACCTGCATGCCATGTACAAAGTAAATGTAGAGGATCTTTCGCAGCTACTCGCCTACCACGAAGTGTTTGGCAAACTTAATTCAGAAGGGCAACAGCAACAAGCAAAGGTGATCAGTGAGGTTGAAGTGGAAGTGGAGGCAGGCACCAGCGCTGCTATGTCGGAAGCAGAATCCTCACCAGGCCATCACTCATGTGATATCTGTGGGAAAATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGTTATCACGGCGAAAGTAAGCCATTCACGTGTCAAGTTTGTGGTTCAGCATTTGCAAATCCAGTTGAATTATCGAGACATGGAAAATGCCATCTTGCTGGAGATCCAAACGAAAGACACGCCAAAAGGATGGCGCAGGATAAGCCCTACGCTTGCACCACTTGCCACAAAACATTTTCTCGGAAAGAACATTTAGATAATCACGTGCGAAGTCATACTGGAGAAACTCCTTACAGGTGTGAATTCTGCGCGAAAACTTTCACCCGTAAAGAGCATATGGTCAACCACGTTCGAAAACATACGGGCGAAACTCCGCATCGATGTGATATTTGCAAGAAGAGTTTCACCAGAAAAGAGCACTTTATGAACCATGTTATGTGGCATACAGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAACAAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGCGAATTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATATTGTGGCATACGGGAGAGACGCCACACCGCTGCGACTTCTGTTCCAAGACATTTACTCGTAAAGAGCACCTGTTGAATCATGTCCGCCAACACACAGGCGAGTCGCCTCACCGTTGCAACTTCTGTAGCAAATCCTTCACTCGCCGAGAACATCTAGTAAACCACGTACGGCAACACACCGGAGAAACGCCCTTCCAGTGCGGATACTGCCCTAAAGCATTCACAAGGAAGGATCACCTGGtgAACCATGTACGTCAGCACACTGGTGAATCCCCACACAAGTGCTCATTCTGCACGAAGTCGTTCACCCGTAAGGAGCACTTGACGAACCATGTGAGGCAGCATACGGGCGAGTCCCCACACCGCTGCTCTTACTGTGCTAAGTCATTCACGAGAAAGGAGCATCTTACCAACCACGTCAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGCGGGCCTTCGCGCGCAAGGAACATCTCAACAACCACATTAGGCAGCACACCGGAGTCACGCCGCACGCCTGCTCCTACTGCAGCAAGAGCTTCACCAGGAAAGAACATCTCGTTAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGTTCAAAGTCGTTCTCTCGTAAGGAGCATCTCACGAACCACGTGAACCTTCACACGGGAGAGACGCCGCACAAATGTCCATTCTGCACAAAAACATATTCCAGGAAAGAACACCTGACCAACCATGTGAGAATTCACACTGGTGAGTCTCCGCATCGCTGCGACTTTTGCCAAAAGACGTTTACACGCAAAGAGCACCTGACTAATCACTTGAAACAACACACTGGTGACTCTTCCCACGCCTGCAAGGTCTGCTCCAAGCAGTTTACTAGAAAAGAACAACTCGTCACACACAtgagGTCTCACAGCTGTGGTGAACGTCCTTTTAGCTGCGGCGAATGCGGCAAGTCTTTTCCATTGAAAGGCAACTTATTATTCCATGAACGGTCACATAACAAGAATAATGCAAATGCTGCTAACAAACAGTACCGATGTGAAATCTGTTCTAAAGTTTTCCTCTGTAAagGTCACTTAGTATCTCATCGGCGAACACATCCGGAGTGGGTTGAGGGGTCAAACCCCGCGGAAACATCCACTGAAACTGAAGACTGTAACAAAGGCAACACATGTATCAAAGTGGAACCAGAAAGAACTGAAAGAAAACATGAAGTCAGAGCTACAGTTGAAGCGAGACCAGCAGAAACTAATGTTCCACAAACTCAGCCAAATACGCCTACTGTCATGATCACAAATAATCAACAAGTACGCGCGCCGAGCGTAGGCGCCGTGAGCGCAGTGGGCGCGGGAAGCACGTCGGGCGGGGCAGTGGCAGGCACGTACACGCATGCGGTGGCCGCCACGCACCACGCCGGGGCCGCGCTCTCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQEHHNMNTGGGQPPGSSESQGQRVQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHNQQQAELAAAQAQAQAQASNSNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMATARPEHSNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQTTGEPANILVTHNPDGTTSIEASAADPLIVKDEKSGNKIDPTQFAIPTDIKDIKGIDLKNVGTMGMEGAVVKISAGAAEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLTNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTYSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDSSHACKVCSKQFTRKEQLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANAANKQYRCEICSKVFLCKGHLVSHRRTHPEWVEGSNPAETSTETEDCNKGNTCIKVEPERTERKHEVRATVEARPAETNVPQTQPNTPTVMITNNQQVRAPSVGAVSAVGAGSTSGGAVAGTYTHAVAATHHAGAALSHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-