Slub029811.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992300.1:11829296-11833783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 15 7.2 0.2 2 23 299 321 298 321 0.96 2 12 0.00025 0.025 16.0 1.6 2 23 326 347 325 347 0.97 3 12 0.18 18 7.0 1.6 2 23 351 372 350 372 0.95 4 12 0.82 80 5.0 0.6 1 23 377 400 377 400 0.92 5 12 1.3 1.2e+02 4.3 0.1 2 23 458 480 458 480 0.93 6 12 0.00082 0.081 14.4 2.5 1 21 502 522 502 523 0.93 7 12 0.2 20 6.9 1.8 1 23 531 554 531 554 0.96 8 12 7.5 7.4e+02 1.9 0.3 2 12 560 570 559 582 0.69 9 12 0.00021 0.021 16.2 0.6 2 23 592 613 591 613 0.96 10 12 0.19 19 6.9 0.1 2 23 640 660 640 660 0.94 11 12 8.1e-06 0.0008 20.7 2.6 2 23 666 687 665 687 0.93 12 12 0.45 44 5.8 0.6 3 23 693 712 692 712 0.95
Sequence Information
- Coding Sequence
- ATGCCATCTTTTGGATGTGGAGacACACCTGCAATTGAATTACCAAGAGAGTGTGCGAAAGACGCTTATTTAAATGAGACTATCAGCGAAGAGCTTGAAGTGACAGAGTCCGTGCCTAATGAAACACGTGGGACACCAGCTGATAAACCTCAACCTGTGAAGCAAGTACTTCAGTTGCGTTTATTAGACGACGAAGGTGTTTGTGATGAACCAATATATGAAGTTCTGACAGATGAGGAACCCAACAAGGACGTGGACAAGAAACAAACAGCGACACAGACTGACGtaCAAAATACGTCTTCAATTGTAAACGATCCGCCGAGCGAGGAGAGCGAAGTTCAATCTGCGCCAATAGATGCACCACCCGAGACAACAACTCCGACATGTGACAGGTACACCAACAAGGAATACTGGAAGTTGAAGCTGAAGCACATATTCCACAACACGCAGTTCTGTGGAGTCTGTTTGGAGGCTGACGTCGACATGACCGCGCTCTCCCATGTGTTTGAGATCACTGATGATGAAAGGACTTGGAGCACATCTCTCGCAGACATTGTACATAAGGTCTTCAGAGAGGGTGGATATTGGCCGGCTAACTTGCAAATATGCAACAATTGTATCAAGAAACTACTTCagtcttatatttttatacgcaAAGCTGAAGAGACATCGACAATGCTGGAGCGTCACTTAGATGAGTTGTACACTAAAACTTGTTACGTGCGTAACAAATCTCTGAAAGATGCCAACAGCGCAGAACCAAAGATATACAATGTTGTTATTGCATTAGACAATAAAGTGATTTCACAGAACTTTGAAAGTAacgaaattaaaatagaaacacCGGAACCAGTGCAAAGTGAAAGAGGTCAGATTGGTGACAAAAGGAAACTGAGGTGTGTGAGTTGTAATGTGGTTGTACGGTCGTACAGAGCTTGGAGGAGGCACGAGAGAACAGCTCACAAACAGAGTGTCAGATGTAGAATATGTCTCCAGAGCTACAAGACACAGCGGGCCTTGACTACACATTACAGGACGCATTTGAGGTCGCGCTGTCCGTTTTGTCACAGAACTGTGCGAGATGGTGCACTGTTGCAACATTTGAAGACGCGCCACAAACACTCGATACACTCGTGTACGACGTGTAATGTCGCTCTCTACTCCGCCGAGGCTCTAGGGACTCATATAGAGGAGTGTCATCGTAGAGAGGGTTCTAAATGTGTGACGTGTCTGCAGAGTTTGTCGCGAGTCGAGTTGGAGCGGCACCAGTGCAGGTTCAAGTGTCCGGAGTGTGAGGAGTTGCCTTGTGTCCATCACCGGCACCTGATGTGGTACAGAGAGCAGATGGACCTGGACCCTGGACCCAGGGCCAAGTGTGCGGATTGTCGCTACGTGGCGTCCAGCAAGCGGGCGATGTTAGACCATGTCAACGCAACACATCTCAGTGGACATCGCCTCTGTCGGTCAGCTCTAACTGCATCTGACAAGGACAAGAGACACCTCCACGAGTGCCGATATTGTGACAAAGCATTCAGCAATTTGTACATGTGGAAACGACATGAGAAACACTGTGAGGGTATTCAAAGGAAGTATCAATGTGACGTTTGTCCAGCTAACTTTGATTCGACAAAAGATCACATGAAACATAGAAAAATCAAGCACGGCAAAGAGTTCCTCTCGTGTAGGCTGTGCGACAGAGTGTTTCTAAACGACCTAAAGAAGACGAGGCACGAACGGCAAGCCCACGGCGAACAGAGAAGAAGAGCGAACTTAGTTTGTGCGTCGTGTCACACTGAGTTCTCTTCGAAGGCGGCCTTAGAACTGCACATGAGATACCATGGAGCTGAAGCAATGGGTCAGCTCGACAATTTGGGGCAGTTGAAGAGTCACAAACACAGACGCAGACGTTCGTTTGCGGTGTGCGAAGTTTGTGGCGCAGTGATGAGGCGGATTCTGTTGAAGAAACACATGAAAGGCCATTCTATGGCGACAGTGTCGTGTAAAACGTGCGGCAAATCCTTCCAGAGCTCGAGTTTACTGAGACATCATCAGAGTGTTCACGCGAGGACTGCGCCGTGTCCTAGATGTAGGAAAATGATAAGTTCTGCAAAGTTATGGCGACACTTCAGGAATCACCTCATTCGAGACTCTCTTAATTTCAAAGTTGCTGCAATATATACTTAG
- Protein Sequence
- MPSFGCGDTPAIELPRECAKDAYLNETISEELEVTESVPNETRGTPADKPQPVKQVLQLRLLDDEGVCDEPIYEVLTDEEPNKDVDKKQTATQTDVQNTSSIVNDPPSEESEVQSAPIDAPPETTTPTCDRYTNKEYWKLKLKHIFHNTQFCGVCLEADVDMTALSHVFEITDDERTWSTSLADIVHKVFREGGYWPANLQICNNCIKKLLQSYIFIRKAEETSTMLERHLDELYTKTCYVRNKSLKDANSAEPKIYNVVIALDNKVISQNFESNEIKIETPEPVQSERGQIGDKRKLRCVSCNVVVRSYRAWRRHERTAHKQSVRCRICLQSYKTQRALTTHYRTHLRSRCPFCHRTVRDGALLQHLKTRHKHSIHSCTTCNVALYSAEALGTHIEECHRREGSKCVTCLQSLSRVELERHQCRFKCPECEELPCVHHRHLMWYREQMDLDPGPRAKCADCRYVASSKRAMLDHVNATHLSGHRLCRSALTASDKDKRHLHECRYCDKAFSNLYMWKRHEKHCEGIQRKYQCDVCPANFDSTKDHMKHRKIKHGKEFLSCRLCDRVFLNDLKKTRHERQAHGEQRRRANLVCASCHTEFSSKAALELHMRYHGAEAMGQLDNLGQLKSHKHRRRRSFAVCEVCGAVMRRILLKKHMKGHSMATVSCKTCGKSFQSSSLLRHHQSVHARTAPCPRCRKMISSAKLWRHFRNHLIRDSLNFKVAAIYT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442067;
- 90% Identity
- -
- 80% Identity
- -