Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992296.1:9113055-9114188[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.81 79 5.0 5.9 1 22 157 178 157 181 0.89

2 7 0.05 4.9 8.8 1.0 2 23 187 207 186 207 0.86

3 7 9.6e-06 0.00094 20.5 0.7 1 23 213 235 213 235 0.98

4 7 0.00012 0.012 17.0 1.5 1 23 241 263 241 263 0.99

5 7 1.1e-07 1.1e-05 26.5 1.2 1 23 269 291 269 291 0.99

6 7 0.00031 0.031 15.7 2.7 1 23 297 320 297 320 0.97

7 7 0.00011 0.011 17.2 1.3 1 23 326 349 326 349 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.81	79	5.0	5.9	1	22	157	178	157	181	0.89
2	7	0.05	4.9	8.8	1.0	2	23	187	207	186	207	0.86
3	7	9.6e-06	0.00094	20.5	0.7	1	23	213	235	213	235	0.98
4	7	0.00012	0.012	17.0	1.5	1	23	241	263	241	263	0.99
5	7	1.1e-07	1.1e-05	26.5	1.2	1	23	269	291	269	291	0.99
6	7	0.00031	0.031	15.7	2.7	1	23	297	320	297	320	0.97
7	7	0.00011	0.011	17.2	1.3	1	23	326	349	326	349	0.94

Sequence Information

Coding Sequence: ATGGTTGGAACCATGATCCTGTTAAAAATGCTGCACTGCAAAAGAATGTGTgctaacaaaacaaatactacTGATCAGTCTGCTAGTAGGAAGCCTGCACAAGAGGAAAAGTCGAGAATGAAAACAGTAAAGAAAGAAAGTGTGGACAATGTTTGTAGAGTGTGTCTTAAAGAAGGAAACATACCTATTCATGGAAATGATGAAAGTGAAGATATTTCAAATGAATTAAATACGTTTGGAGAATTAGATATAAAACGGGATGACCCACATCCAAAGTTTATTTGTCAATCTTGTAATTCGTTGTTACAAGGAGctatattatttagaaaaacgGCACAGCAATCAGACGAAATTCTCAAAAACCGAAAGACTGAAGAGTTAATTGAAGAAATCGATAACACAACAGAGCATTTAGAAGAAGATAATCCTCCTAATGTTCAAGaggacaaaattaaaaagaaggaGGGACACCGTTGTAGGAGGTgcaacattaaatttaaatctttcaAAAAACTTCATGAGCACAAATTAAGTGATGAACACGAAAATATGAGACAGGTCTGCCCATATTGTCATAAAACCTATGCACCTTTGTATTATAAGAAGCACTTAGAGTTACATACAAAACCTCGATCTTTCGTCTGTGATGTATGTGGTAAGGAATTTGTAATGCAACATGCTTTTGCACGCCATCGACTTACACATTTCTACAAATTACCTTACAAATGTTCCCTATGTCCGTACAAAGGAAGATTCAGCGAATCGCTAAAAATGCACATGCGTTCACACACGGGAGAGAGACCATATCAATGCACTGAATGTCCTTCAAGATTTATTAGTAAAAGcaatttaaacaaacatatGTTAACGCATAAAGATGAACCTGATTTTAAATGTGATACCTGTGGCCGAGGGTTTCATACCAAACGTCAGATTGAACAACATTATAAAGTAGACCATGTTGGTGTTAAAGACCATGCATGTAAAATATGCGGAAAAGTATTTGGATATCGAAAACAAATGATGAAACATGAGCTTAAAGTACATAAACGGGCAAAGATGAGGAGTGGAAGAACACCTATCTACCTGAAGGTGGAGAGTATGCAGGGTCAAAAAGCTATATCAGAAAGCTAA
Protein Sequence: MVGTMILLKMLHCKRMCANKTNTTDQSASRKPAQEEKSRMKTVKKESVDNVCRVCLKEGNIPIHGNDESEDISNELNTFGELDIKRDDPHPKFICQSCNSLLQGAILFRKTAQQSDEILKNRKTEELIEEIDNTTEHLEEDNPPNVQEDKIKKKEGHRCRRCNIKFKSFKKLHEHKLSDEHENMRQVCPYCHKTYAPLYYKKHLELHTKPRSFVCDVCGKEFVMQHAFARHRLTHFYKLPYKCSLCPYKGRFSESLKMHMRSHTGERPYQCTECPSRFISKSNLNKHMLTHKDEPDFKCDTCGRGFHTKRQIEQHYKVDHVGVKDHACKICGKVFGYRKQMMKHELKVHKRAKMRSGRTPIYLKVESMQGQKAISES*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00823447;
90% Identity: iTF_00441941; iTF_00824211;
80% Identity: -