Slub030398.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992301.1:5121834-5129080[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00083 0.081 14.4 0.6 1 23 247 269 247 269 0.96 2 10 6.9 6.8e+02 2.0 0.8 3 23 293 314 291 314 0.89 3 10 0.00021 0.02 16.3 1.7 2 23 336 357 335 357 0.95 4 10 0.058 5.7 8.6 2.2 2 23 362 383 361 383 0.96 5 10 0.00046 0.045 15.2 2.0 1 23 390 413 390 413 0.86 6 10 0.28 27 6.4 0.4 1 23 419 442 419 442 0.90 7 10 0.00015 0.014 16.7 2.6 1 23 448 471 448 471 0.97 8 10 3.8e-05 0.0037 18.6 2.1 1 23 477 499 477 499 0.98 9 10 3.3e-07 3.2e-05 25.1 0.6 1 23 505 527 505 527 0.99 10 10 0.00026 0.026 15.9 2.8 3 23 535 556 533 556 0.93
Sequence Information
- Coding Sequence
- ATGAGTTTAAGCACTCGCAAAGGCCCTATAGTGGACCCTGGCTTGTGTAGATGCTGTGGCGCTATTAAAAAATGCCGCATTATGACCGTTGAATACGAATATTCAGGGACGAAGGAAGTGTATTCTGATATGTTTGTAGACAGTTTCGGTCTGGTGCTTTCTCATTTGGATGGTGAAGAGTCAGAGAGGCTTATATGTGCGACGTGTGTTGTTCGGCTGCGGGATGCTCGTTCATTCAGACTCCAGGTCTTGCAATGTGAGGAGAGATTACTGAGCGCTGCTTTACATATTCATGAGGATGACAAAACTCTAAAAGCCGAGGTAGAAGTGAAGGAGGAACTTGAAGATGCGCTTCAACAGCAAGGACCTGAGAATGAGGCGACGGACGCGCAATTAGAAGAAGGCGCTGTGGATGACGGAGAAGTACATGATTACCTGGAACTGGATGACGATGTACAAATTacaaagaaagaaacaaaattaaagaaacCACCTAAGGGGAAGAAGAGTTTGACCAAAACGACTGTAAGTCGAAAACGGAGGATCACTCATGATGGAGtggagaaaaaaaaagtactccAGAGGAGGAAAAACCTGAGATCAAAGAATAGCGatgTCCAACGCCCCTTTCCGTACGTCAAGAATCCAGACGTAGAGACCGCGTACAAATCCGTAGCCAATACAATCACAATAGTAGAAAACTCCTTCGTATGCCCCTTCTACACTTCTTATAGCAACTACTATTGTATTTACTGTAAAGAAATATTCACGAACCCCAATGAACTCAGAGAACACACCTCCACTCACGACCCAACTACATTCAAAGATAATATAGCattacaaaaattactcttAGTCGACATTGACCGAATAGATTGTCGCCTTTGCCAAACAAAAATTGACGacatagatttattaaaaactcaCCTCACCGACTGTCACGATAAAAAATTCTACCAAACTACCatggattttttgaaattccgtTTAACTGTCACCAATTTGACGTGTACCGAGTGCGGGAGTACGTTTAGTTTCTTTCacgcattaaaaaaacatatggcCGAACATTTTGGTTCGTGTATATGCGATATTTGCGGCGCTCATTATTTCGAAGAAAGAATGTTAACTTTGCATCAAAAATCTCATCAAAAAATAGAATTATCGTTTCCTTGTAAAGATTGTGGGAAAACATTTAAATCTAAATACAGTAAAGATTTACACGAAACTAAAATGCATAAGAAAGAACCTGCGTATCCTTGTTATAAATGCGACGAGGTTTTGTTCTCTTACTCTTTAAGGTACCGGCATATGGTAGATGTGCATGGTGATAAAAGAATGTTCCCTTGCGAGCACTGCGATAGGGTGTACGATAGCCGAAAGTCCCTCCGAGAACACAACCGTCGTTaccatttaaaaattttcaaacacCAGTGTGACCTGTGCGATAAAAGATTCTACCTACCATCCAGGTTACAAGAGCACATGTCAACACACACGGGTGAGAGAAATTATAGATGTGAATATTGTGGGAAGTCATATCCAAGGTTAAGGGGTCTTAAAGTTCATATGCAATCACATAATAGTGAGAAAAAAATTTGTTGTGTTATGTGTAACGCTACTTTTACACAAAATGCTAGTTTGAGACATCACATGGAACGGTTGCATCTGGTAGATGTAAAAGGATGCTTCGATACATAA
- Protein Sequence
- MSLSTRKGPIVDPGLCRCCGAIKKCRIMTVEYEYSGTKEVYSDMFVDSFGLVLSHLDGEESERLICATCVVRLRDARSFRLQVLQCEERLLSAALHIHEDDKTLKAEVEVKEELEDALQQQGPENEATDAQLEEGAVDDGEVHDYLELDDDVQITKKETKLKKPPKGKKSLTKTTVSRKRRITHDGVEKKKVLQRRKNLRSKNSDVQRPFPYVKNPDVETAYKSVANTITIVENSFVCPFYTSYSNYYCIYCKEIFTNPNELREHTSTHDPTTFKDNIALQKLLLVDIDRIDCRLCQTKIDDIDLLKTHLTDCHDKKFYQTTMDFLKFRLTVTNLTCTECGSTFSFFHALKKHMAEHFGSCICDICGAHYFEERMLTLHQKSHQKIELSFPCKDCGKTFKSKYSKDLHETKMHKKEPAYPCYKCDEVLFSYSLRYRHMVDVHGDKRMFPCEHCDRVYDSRKSLREHNRRYHLKIFKHQCDLCDKRFYLPSRLQEHMSTHTGERNYRCEYCGKSYPRLRGLKVHMQSHNSEKKICCVMCNATFTQNASLRHHMERLHLVDVKGCFDT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00707262;
- 90% Identity
- iTF_00441865; iTF_00824174;
- 80% Identity
- -