Slub030505.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992301.1:6025385-6027238[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.1 2e+02 3.7 1.4 1 23 49 71 49 71 0.92 2 14 1.7 1.6e+02 4.0 0.1 2 23 99 121 98 121 0.92 3 14 0.0056 0.55 11.8 0.5 2 23 142 164 141 164 0.96 4 14 0.00017 0.017 16.5 1.4 1 23 169 192 169 192 0.94 5 14 0.9 88 4.8 3.3 1 23 196 219 196 219 0.89 6 14 0.12 12 7.6 1.3 3 23 223 244 221 244 0.95 7 14 0.0015 0.14 13.6 3.4 1 23 318 341 318 341 0.94 8 14 0.00013 0.013 16.9 0.8 1 23 414 437 414 437 0.97 9 14 3.5e-05 0.0035 18.7 1.1 1 23 442 465 442 465 0.97 10 14 0.00022 0.021 16.2 1.4 1 23 472 495 472 495 0.95 11 14 0.0013 0.13 13.8 0.8 1 23 500 523 500 523 0.94 12 14 2.5e-06 0.00025 22.3 1.4 1 23 527 550 527 550 0.98 13 14 0.0053 0.52 11.8 1.8 2 23 557 578 556 578 0.97 14 14 0.026 2.6 9.6 1.6 1 23 584 606 584 606 0.96
Sequence Information
- Coding Sequence
- ATGCTTGTGAAATACAATGGAGAAAATTTCTTTTCAGGTTCCGAAAGAGAGCCACCAAAGAAAAGTGATAATTATGTAAGGAGGAAGAACCTGCTTATTCTATTCAACAACACAACTTTGATACCCTTTAAATGGCGAGGCAAATATCTGTGCTTCTATTGTGGAAACGAAGTTGGTAGTTATAAACGTCTCCGAAAGCACACGTACAACCACGGCCTCTGTTCCGAAACGGATAAAGCCATACGACTCGTGAAATCGATAGATTCAGAAATTAAAATTGACGTTTCGTACATAAAATGCAAATTGTGCTTCCAGGCTTTTCTTGATCTGGATAATATTGTCGACCATTTGATCTCATCACATGATTTGACCTTCAATAAAGATGCTAAATTAACAATAACCACGTATAGACTACTAGACTTGCAATGCTTACTTTGTGACGAACAATTTGACTATTTCCAGAAACTTGTCAGTCATATGAATACCTCTCATCCTAACAACTCTTTCTTGTGTACGGAATGCGATCAAATATTCAACAAAATGCGCGATTTGCGCACTCACATGAGAAATTACCACCAAAAAGAATATACTTGTGTCACgtgcaatgcaacgtttaattCTCACGTAGCATTGAGATTTCATAGGCTACATTCTCATCCATCTAACTGTTACGTATGTTTCCAAACTTTCTCTTCAGAGATGAAACGAATTAATCATATGAAAAATGAACATACTGGTGATCAAGTTAAATGTGGGCATTGTAAAGAACTTTTACCAAATACAAACGCTGTATTGCGACACGGTTCCAAATGTACTGCTAAAAAAGATCCAGCACTAGAAACTATCGTAGTGGACGATGAAGAAAAGAAAGTAGCAACAAAAGATCTCAGGAATAGCATCGCTACCATCATTAACATGTCCACTGCGATACCGTTTAAATTCTTCATTAAATTCAGATGTTTCTATTGCTCCAAAGATTTTTCCAACTGCGACGGTTTAAAAGAACACACAGTTATGCAACATCCTCAATGTAACGTAGGCGACAAGTGCATGAAGCTCCGCAACAGATATGACGgcaataaaatcaaaattgatATTGCATCTCTTTCTTGCAAACTGTGTTACGAACCATTGCTAGACCTAAACACTTTAATCGAGCATTTGACGACAGAACACAAGGTTCAATTTAATAAGGCTGTGGAAAGTCACCTGCAGACATTcaaattgataaaaaacaaCTATTCATGCCCTCAATGTGACGAAGTTTTTAGATATTTCACTGTGCTTCTCAAACACATGAGTAAAAGTCACACCGGTAATAAGTATATTTGCGTGTTCTGCGGGCAATCCTTTAGAACTTACCCCAATCTTCGCTCTCACGTCAAAAGACGTCATAAAGTATCTACGACGACGTTCGAATGTAACAATTGCGATTTAATTTTCACATCTTGCGCCAGCTTAAAACAGCATTTGGGAAAAGACCATGACGTCAAAATGTTCAAATGCATTGATTGCCAGGACAAGTTTTCTACCCAGTACTGGTTGCAACGCCACATGCTTCTTGTACATGGGGAGGGATATAAATGCACTTATTGCGATAAGGCTTTTATCAAAAACTCATTCTTAGTGAATCATGTGAGGCGGTTGCACTTAAAAGAGAGGAATGTTAAATGCAAGGTTTGCTCTGAAAAGTTCTTCGATCGGCAGAGATTGAAGATGCATATGGTTAAGCATGTTGGAGAAAGAAATTTCCATTGCGATATTTGCTCGAAAAGATTTCTGTGGAAGCGCAATCTTAAGGCCCATATTGCGTCACACGCGAGAAACGCAAACGCTCAAACTGGCATCACCTAA
- Protein Sequence
- MLVKYNGENFFSGSEREPPKKSDNYVRRKNLLILFNNTTLIPFKWRGKYLCFYCGNEVGSYKRLRKHTYNHGLCSETDKAIRLVKSIDSEIKIDVSYIKCKLCFQAFLDLDNIVDHLISSHDLTFNKDAKLTITTYRLLDLQCLLCDEQFDYFQKLVSHMNTSHPNNSFLCTECDQIFNKMRDLRTHMRNYHQKEYTCVTCNATFNSHVALRFHRLHSHPSNCYVCFQTFSSEMKRINHMKNEHTGDQVKCGHCKELLPNTNAVLRHGSKCTAKKDPALETIVVDDEEKKVATKDLRNSIATIINMSTAIPFKFFIKFRCFYCSKDFSNCDGLKEHTVMQHPQCNVGDKCMKLRNRYDGNKIKIDIASLSCKLCYEPLLDLNTLIEHLTTEHKVQFNKAVESHLQTFKLIKNNYSCPQCDEVFRYFTVLLKHMSKSHTGNKYICVFCGQSFRTYPNLRSHVKRRHKVSTTTFECNNCDLIFTSCASLKQHLGKDHDVKMFKCIDCQDKFSTQYWLQRHMLLVHGEGYKCTYCDKAFIKNSFLVNHVRRLHLKERNVKCKVCSEKFFDRQRLKMHMVKHVGERNFHCDICSKRFLWKRNLKAHIASHARNANAQTGIT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823351;
- 90% Identity
- iTF_00441850;
- 80% Identity
- -