Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992301.1:5185529-5186596[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.17 17 7.1 0.0 3 23 84 105 82 105 0.94

2 9 0.0037 0.37 12.3 3.9 1 23 127 149 127 149 0.96

3 9 1.7e-05 0.0017 19.7 0.7 1 23 153 175 153 175 0.98

4 9 0.12 12 7.6 0.3 1 23 180 203 180 203 0.92

5 9 2.7e-05 0.0027 19.0 2.1 1 23 209 232 209 232 0.98

6 9 0.01 1 10.9 1.3 1 23 239 262 239 262 0.95

7 9 0.00011 0.011 17.2 1.5 1 23 268 290 268 290 0.96

8 9 3.7e-07 3.7e-05 24.9 1.0 1 23 296 318 296 318 0.99

9 9 2.7e-07 2.6e-05 25.4 2.7 1 23 324 346 324 347 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.17	17	7.1	0.0	3	23	84	105	82	105	0.94
2	9	0.0037	0.37	12.3	3.9	1	23	127	149	127	149	0.96
3	9	1.7e-05	0.0017	19.7	0.7	1	23	153	175	153	175	0.98
4	9	0.12	12	7.6	0.3	1	23	180	203	180	203	0.92
5	9	2.7e-05	0.0027	19.0	2.1	1	23	209	232	209	232	0.98
6	9	0.01	1	10.9	1.3	1	23	239	262	239	262	0.95
7	9	0.00011	0.011	17.2	1.5	1	23	268	290	268	290	0.96
8	9	3.7e-07	3.7e-05	24.9	1.0	1	23	296	318	296	318	0.99
9	9	2.7e-07	2.6e-05	25.4	2.7	1	23	324	346	324	347	0.95

Sequence Information

Coding Sequence: ATGACATCCGCGAGGATCGGCTACGAGAGACGGGCTATCTTCAGAAATAACATTGCTATCATCATGGAATCATGTACGGCGTACCCTTTCAAGTACAGGAAAGGGACATACTTATGCTTCTTTTGTAAAAGTACATTTCTCGAGCCTGAGAAGTTAAGAGAGCATAATCATATAAATCACTCAGAAGTTAAGCAACTCCTCAAACCAAGAAAGTATGAACCTCTAAAAATGGACTTCGCAACGACCATTTGCAAAATGTGCGATATTGAAATTGAAGACTACGCGATGCTAAAGATCCATCTTACGGTGGAACATGGCAAAATTATAGACTGCACGTATGGGGACAGTGTTTTGCCTTACAAATTGAGTAAAGAAGAACACAATTGTCAGATATGTGGAAAGACGTACGAAATGTTTCTGAGTTTGCATAAACATATGAACGATCATTACGAGCATTTTATATGTGAAAAATGCGGGAAACGTTTCGCTACGTCCCAAAGAATGATAAACCACGCTAGGACGCATGAACGAGGGGATTTCCCTTGCAAAAGATGTACAGACACCTTCCCTTCATACGCCTCTCTGTATGCCCACAACGCTAAAGTCCACCGATCGAACAAAAGATACAAATGTCCAATATGTGACGAGAAGTTTGCTTCGTACAAACATAgacttaaacatttaaatacaatacatgGTGAAAAGACTGCGGTTTTTCCCTGTCCGTCTTGTCCTAAAGTTTTTGATCTCTGCAGCCGAAGAACTGCTCATATTCGGTTTCAACATTTACAAGAAAGGAATCATGTTTGCTCCATTTGCGGGATGAAATTCTTTACGAATTACGAACTGCAAGAACATTCCATAAAGCATGGGGGAGAGAGAATATATCAATGTGATGTTTGCAAGAAATCATATGCTAGGTTAAAAACATTAAGGGAGCATATGAGAATACACACTAATGATAGGAGGTTTATTTGCCCTGTTTGTGGGCAGTCGTTTATCCAGAATTGTAGTTTAAAACAACATATGCGAGTCCATCACCCAACATCGCTTAAAGACGTATTTtag
Protein Sequence: MTSARIGYERRAIFRNNIAIIMESCTAYPFKYRKGTYLCFFCKSTFLEPEKLREHNHINHSEVKQLLKPRKYEPLKMDFATTICKMCDIEIEDYAMLKIHLTVEHGKIIDCTYGDSVLPYKLSKEEHNCQICGKTYEMFLSLHKHMNDHYEHFICEKCGKRFATSQRMINHARTHERGDFPCKRCTDTFPSYASLYAHNAKVHRSNKRYKCPICDEKFASYKHRLKHLNTIHGEKTAVFPCPSCPKVFDLCSRRTAHIRFQHLQERNHVCSICGMKFFTNYELQEHSIKHGGERIYQCDVCKKSYARLKTLREHMRIHTNDRRFICPVCGQSFIQNCSLKQHMRVHHPTSLKDVF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01416159;
90% Identity: iTF_00908208;
80% Identity: -