Slub029804.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- ZNF341
- Assembly
- GCA_905220595.1
- Location
- HG992300.1:11729644-11732698[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0042 0.41 12.1 0.3 1 23 236 259 236 259 0.94 2 17 3.5e-05 0.0035 18.7 3.8 1 23 264 286 264 286 0.99 3 17 0.0064 0.63 11.6 0.7 1 23 316 339 316 339 0.94 4 17 0.017 1.7 10.2 0.5 2 23 400 422 399 422 0.93 5 17 0.00047 0.046 15.1 1.0 1 23 428 451 428 451 0.93 6 17 0.00024 0.023 16.1 0.6 1 21 454 474 454 475 0.95 7 17 0.022 2.1 9.9 0.5 1 23 483 506 483 506 0.94 8 17 0.55 54 5.5 1.9 1 23 511 534 511 534 0.94 9 17 0.038 3.7 9.2 0.2 2 23 547 568 546 568 0.96 10 17 0.0009 0.088 14.3 1.2 1 23 574 596 574 596 0.97 11 17 0.01 0.98 11.0 2.0 1 23 632 654 632 654 0.96 12 17 0.013 1.3 10.6 0.1 3 23 660 680 659 680 0.93 13 17 0.00032 0.031 15.7 1.4 2 23 699 721 698 721 0.96 14 17 0.0013 0.13 13.7 1.1 1 23 727 749 727 749 0.98 15 17 0.078 7.7 8.2 7.2 2 23 756 777 755 777 0.96 16 17 3.1e-05 0.003 18.9 2.1 1 23 783 806 783 806 0.97 17 17 3.9 3.9e+02 2.8 3.3 3 23 813 834 811 834 0.95
Sequence Information
- Coding Sequence
- atggTTGACATGGGTCCAAACCACTCTGATCCCAACAACCTGGAATGGCTGAAGCATAAAATAAAGTCAGTATGGTCTTCACCAAAGTTCTGCGGCCTGTGCTTGGAGAATGCAGGCAACTTTTGTTCAGTTGACATGGAGCTGGTTATTAATAAGCAGAACTTCTCCAGGTGCCTTCAGGATATCATAAACTATGTTTTCAATGATGATATTGAAATCTTCATGTCAAGCCACTATTTATGCGACAGTTGCACAGAGAAAATTATTCAATGCTACCTCTTCATACACAATACTAAGCAactttcaaaaattataaacaactgTGTCACAGATTTATATTCAAAAGTCATCGATGTCAATGATCAAATAGGCAACTCTAACAATCTAACAGACTACGAGAATGCCAATGTCATGATTGTTCTAGAAACTGACACAGAATTGTGCAAAACTATTATGGATAGTAAGATGACCGAAATTGTCCCAACGGCTACCCCAATACCCATGAAAAAAGAACAACCCAAAGACCCAGAAATAGTCAAAGTTGAATTATTCCAAGATGAACCAATTCCAAAAGAAGTTATCACTAAAAAATCAACTCCAAAACCTTTGAAATCTGATGATACTCCGAATATTACTTTGAAAGAAGGCCATATTGTAATAAAACCGTTGAACTCCACAAGGAATTTGCCTCCGCGTTTTAACACTTATGAATGTGCCAGTTGTCCAGAAATCTTTACCACTTATAGGTCtttgaaggaacatgagaaagcCAAACATAAGAAATCGGTTTTCCGTTGCAACTTGTgcaataaaacttataatacGCGGCAGTATTTGAACATACACTACAAGACACATTCAAAAGCTAAGTGCAAGTTTTGTCAAGTAATTTTGCCCGAGGGAGAACTTATGCAACATTTGAGAGAAAACCACGCCTATTTAGTATTTCCTTGTAAGTTTTGTGAGTTGGTGTACTACAGCCAAGACTCTCTGATAACGCATTTCAATTTGAGTCATTTAGTGaacaataataaagtaaaatcgCAATGTATCATGTGCTTGAAGAATTTCAAAGACGGTGAAATCAAGAGACATAAATGCAAGTTTGCTTGTTCCGAGTGCTTTGTGATGCCTTGTGTacattataagtatttaatgtCTTATAGAGAACAGACGCTGAATCACGCTAACAAGATAAAGTGTATAGATTGTGATTATGTAACTAGAAGAAAGGAACATCTAATAGGTCACGTGAACAGAGAACATTTGGATCATCATCCGTTCACCTGTGCAGACTGTGGTCAACAGTTCTACACCAAGTTGAGTTTAAAAACTCACATAGTTCAATTTCACCAAGAATTCAGTTGCGAGTATTGCGATTTTGAATTCAAAGACAACAACAGTTTGGAGAACCATAGAAAAGCTTGTAAGTCGGTCATAAGAGCCTTTAGCTGCAACCATTGCGTAGCATCGTTTGACGTAGAAGAAGAATTAACTACTCACGAGAATTTGCGACATAACGAGAGTATTCACGCTTGCAATCTTTGCAAGAGTAAGTTCATGACTGCTCTACAACTAGAGGAACACCACGCAAGAGTGCATGGAGGTATCCAATGCAAGAAACGAAGGAAGCGTATAGAATGTACTCTGTGTGACTTGTTGTTTAAAAACATCAAAGAGTTAGTACAACATGAGAAACTCCATGACCAGAATGAGACATACCCATGTAAAGAGTGcccaaaacaatttaaaagtcTAATGAAACTGTACATACATAATCAAAGGCATTACACAAATAGAATGAAATGTCTTCGTTGTAATAAAAAAGTGGCTGCCTCGTTCTATTCACAACACGCTGTCCGCTGTCCGTACAAAAGAGAGGGAGCATTAAAACACGTATGTGAAGTTTGTGGGAAGGCATTCCATCTGGAATCTCTCTTGCGATTCCACCAAAAGATCCATCTAGAACCGGAGCCTTGTCCTCGGTGTGACAAAATCATCAAGCCTTCCAGTTTAAAGCGACATATGGAGCAGGTACATGGAGATTCATCAGAGAAGCAGAAAGCCAAAATAGTAGCAAAGCAGCCCACAATTGAATGTCAAATTTGTGGTCATATTGTTAGAAAGAAACACGATTTGGAAGCACACATGAATAGATACCATCTAAAAATCAAACCGTACGTTTGTCAAATATGTAACAAAGATTTTTGTGGGAAAATACGGTTAAAGGAGCATGTAGCGACTCACACTAATGACAATAATTGCTTCTGTTCTGTCTGTTTTAAGAAATTTGCTAATCGAGTGTGTCTGAAAATGCATTTTAGGATGCATACGGGTGAGGTGCCGTATTCTTGTGATATATGCGGACAGAAGTTCAGGTCTTCCAGTATGATGAAAACACACCGGTTGAAAAAACATTTGGATAAGACCGTATGCTGTCCGTTATGTGACAGTATGTTTTACATGGTACGGGATATGAGacatcactttaaaaaaatccattgGAAGTTTAAGGATAGACCGTTTAATGTCCGAGAAGTTGAAGAGCTCGGAGAACAGTATTACCATTTGTTTGAAGATGGCAGATTACCAAAAATAGACACTTGA
- Protein Sequence
- MVDMGPNHSDPNNLEWLKHKIKSVWSSPKFCGLCLENAGNFCSVDMELVINKQNFSRCLQDIINYVFNDDIEIFMSSHYLCDSCTEKIIQCYLFIHNTKQLSKIINNCVTDLYSKVIDVNDQIGNSNNLTDYENANVMIVLETDTELCKTIMDSKMTEIVPTATPIPMKKEQPKDPEIVKVELFQDEPIPKEVITKKSTPKPLKSDDTPNITLKEGHIVIKPLNSTRNLPPRFNTYECASCPEIFTTYRSLKEHEKAKHKKSVFRCNLCNKTYNTRQYLNIHYKTHSKAKCKFCQVILPEGELMQHLRENHAYLVFPCKFCELVYYSQDSLITHFNLSHLVNNNKVKSQCIMCLKNFKDGEIKRHKCKFACSECFVMPCVHYKYLMSYREQTLNHANKIKCIDCDYVTRRKEHLIGHVNREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQEFSCEYCDFEFKDNNSLENHRKACKSVIRAFSCNHCVASFDVEEELTTHENLRHNESIHACNLCKSKFMTALQLEEHHARVHGGIQCKKRRKRIECTLCDLLFKNIKELVQHEKLHDQNETYPCKECPKQFKSLMKLYIHNQRHYTNRMKCLRCNKKVAASFYSQHAVRCPYKREGALKHVCEVCGKAFHLESLLRFHQKIHLEPEPCPRCDKIIKPSSLKRHMEQVHGDSSEKQKAKIVAKQPTIECQICGHIVRKKHDLEAHMNRYHLKIKPYVCQICNKDFCGKIRLKEHVATHTNDNNCFCSVCFKKFANRVCLKMHFRMHTGEVPYSCDICGQKFRSSSMMKTHRLKKHLDKTVCCPLCDSMFYMVRDMRHHFKKIHWKFKDRPFNVREVEELGEQYYHLFEDGRLPKIDT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00441826;
- 90% Identity
- iTF_01502353;
- 80% Identity
- -