Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992274.1:22921116-22935176[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0053 0.52 11.8 5.9 1 23 175 197 175 197 0.98

2 11 7.2e-05 0.007 17.7 1.1 1 23 203 225 203 225 0.98

3 11 7.7e-05 0.0076 17.6 1.7 1 23 231 254 231 254 0.96

4 11 0.011 1.1 10.8 3.3 1 21 260 280 260 282 0.95

5 11 0.00011 0.011 17.1 2.7 1 23 288 310 288 310 0.99

6 11 1.6e-05 0.0016 19.8 3.0 1 23 316 338 316 338 0.98

7 11 0.0057 0.56 11.7 0.5 1 23 346 369 346 369 0.96

8 11 0.044 4.3 8.9 4.9 2 23 376 397 375 397 0.96

9 11 0.00011 0.011 17.2 2.2 1 23 403 425 403 425 0.98

10 11 1.6e-05 0.0016 19.7 4.2 1 23 431 454 431 454 0.96

11 11 1.7e-05 0.0017 19.7 5.1 1 23 468 490 468 490 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0053	0.52	11.8	5.9	1	23	175	197	175	197	0.98
2	11	7.2e-05	0.007	17.7	1.1	1	23	203	225	203	225	0.98
3	11	7.7e-05	0.0076	17.6	1.7	1	23	231	254	231	254	0.96
4	11	0.011	1.1	10.8	3.3	1	21	260	280	260	282	0.95
5	11	0.00011	0.011	17.1	2.7	1	23	288	310	288	310	0.99
6	11	1.6e-05	0.0016	19.8	3.0	1	23	316	338	316	338	0.98
7	11	0.0057	0.56	11.7	0.5	1	23	346	369	346	369	0.96
8	11	0.044	4.3	8.9	4.9	2	23	376	397	375	397	0.96
9	11	0.00011	0.011	17.2	2.2	1	23	403	425	403	425	0.98
10	11	1.6e-05	0.0016	19.7	4.2	1	23	431	454	431	454	0.96
11	11	1.7e-05	0.0017	19.7	5.1	1	23	468	490	468	490	0.96

Sequence Information

Coding Sequence: ATGCCGCCTCCCGATAAAAAGGATAAGACGAAACAGACGCTGATTCAGCAGTACTTGGACCAAAGCACTGCAGTTATTACGgtgAACACCGCTGAAGATGAAGAAGCCGCTGCTGGTGTTACCTACTTTGTGGATGATGAAGGAAGATATTACTACCAGCGAGCTGGGGATGAACAGAATTTGGTGTCATTGCAAACTGAGGCAGATGGTACCGAAgTCATAGGGGAAGAAGAACAAATGATATTAGATACTGAAGTTGCCGAAGGGTTCCAGACCGTGACCCTTGTGCCATCTGAGTCAAGTACTGGAGAAGTCAGCTATGTACTTGTTGTCCAAGAAGAGAACAAACCTGTGGTCAATATTGACCTTAACTTAGAACAGCAGGATGACAAAGGAAATGAAGATGTGTACACTTTTGAAGATGAGGAAGCCGTTGAGGAAGCTtctgaagaagaagaagaggtTGAAGGCAAGGCCAAGACAACGCCAACTACCAAGCGAGCGAAGCATGTCCGGCCTCATTTCACTTGCAACTTCTGTTCTTACACTAGTCACAGGCGGTACCTACTTCTCCGTCACATGAAGAGTCACTCCGAGGACAGGCCGCACAAGTGCACTGTCTGTGAGCGGGGCTTCAAGACCATCGCTTCGCTTCAAAACCACGTGAACATGCACAACGGCGTCAAGCCTCATGTCTGCAAGTATTGCAACAGCCCCTTTACCACGTCTGGTGAGTTGGTCCGTCACGTACGCTACAAGCACACCCACGAGAAGCCGCACAAGTGCACTGAGTGCGACTACGCTTCTGTTGAGTTGTCCAAACTGCGCAGACACATTCGCTGCCATACTGGAGAGAGGCCATACCAGTGCCCACATTGCACCTACGCCTCTCCAGACACGTTCAAGCTGAAGCGTCATCTCCGTACCCACACGGGCGAGAAACCTTACAAGTGTGATCACTGCAACTTGCGCTTCAGCCAATCCAACTCTCTCAAGGCGCATAAACTCATTCATAACGTGTCTGAGAAGCCGGTGTATGCTTGCGAGTTGTGTCCAGCGAAATGTGGACGTAAGACCGACCTGAGGATCCATGTGCAGAAACTGCACACATCAGACAAACCGCTCAAGTGTCGCCGATGCGGCAAGTCCTTCCCCGATCGCTACTCGTGCAAGATGCATAATAAGACCCACGAGGGAGAGAAGTGCTTCAAGTGTGATATCTGCCCTTACGCTTCTACCACCATGCGTCACCTGAAGTCGCACATGCTGAAACATACGGATGAAAAGCCGTTCGTGTGCGACCAGTGCGATCAATGCTTcagGCAGAAACAACTTCTCCGTCGCCACCAAAACTTGTATCACAACCCTGGATACGTACCAAAGCCGCCTAAAGAGAAAACTCATACTTGCCATGAATGCAAACGCACGTTTGCACACAAGGGCAATCTCATCCGCCACTTGGCTCTCCATGACCCGGAGTCTGGACATCAGGAGAGAGCTCTTGCTCTTAAAATTGGCCGCCAGAGGAAGGTCAAATTCGCTAATGGAGATCTCAAGGACGTCGTTCAAGGTCAAGATTCTGACGATCAATCTGAGCTGATAAAGCTGGGCTTAGCACACAATGAATTGAAACGGGGCGAGCTTGTCACTGTGGCTGATGGGGATGGCCAGCAATACGTGGTGCTGGAAGTCATCCAACTCGAAGATGGAACAGAGCAACAAGTTGCTGTGGTCGCCCCTGATTACGTAGAAGAGGAGGAAGCAGAGGAAGAAgcggaggaggaggaggaggaggaggaagaAGAGGAAGAGGAGGAGGGGTTAGAGAAGACTTACAACGACCGGACAAATGGCAACAATGATTGGAGTATTAAGATGGAGAAGGAGGTTGACACATGCTTCGGATTTGATGAAGAAGATGACGCTGACGACGATGATTTCAACGAGAAAGTAGTGTTGCGtctagtttaa
Protein Sequence: MPPPDKKDKTKQTLIQQYLDQSTAVITVNTAEDEEAAAGVTYFVDDEGRYYYQRAGDEQNLVSLQTEADGTEVIGEEEQMILDTEVAEGFQTVTLVPSESSTGEVSYVLVVQEENKPVVNIDLNLEQQDDKGNEDVYTFEDEEAVEEASEEEEEVEGKAKTTPTTKRAKHVRPHFTCNFCSYTSHRRYLLLRHMKSHSEDRPHKCTVCERGFKTIASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDHCNLRFSQSNSLKAHKLIHNVSEKPVYACELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKMHNKTHEGEKCFKCDICPYASTTMRHLKSHMLKHTDEKPFVCDQCDQCFRQKQLLRRHQNLYHNPGYVPKPPKEKTHTCHECKRTFAHKGNLIRHLALHDPESGHQERALALKIGRQRKVKFANGDLKDVVQGQDSDDQSELIKLGLAHNELKRGELVTVADGDGQQYVVLEVIQLEDGTEQQVAVVAPDYVEEEEAEEEAEEEEEEEEEEEEEEGLEKTYNDRTNGNNDWSIKMEKEVDTCFGFDEEDDADDDDFNEKVVLRLV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01152442;
90% Identity: iTF_00823318;
80% Identity: -