Slub022630.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- su(Hw)
- Assembly
- GCA_905220595.1
- Location
- HG992292.1:6891801-6898661[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.2e-05 0.008 17.5 0.3 1 20 46 65 46 67 0.95 2 12 0.00075 0.074 14.5 3.7 1 23 79 102 79 102 0.95 3 12 0.12 12 7.6 0.1 3 23 111 132 110 132 0.96 4 12 0.00016 0.015 16.7 0.7 1 20 137 156 137 158 0.92 5 12 1.9e-07 1.9e-05 25.8 0.3 1 23 169 192 169 192 0.97 6 12 0.032 3.2 9.4 5.4 1 23 198 221 198 221 0.96 7 12 0.18 18 7.0 0.1 1 23 228 250 228 250 0.97 8 12 0.0036 0.36 12.3 1.5 1 23 255 277 255 277 0.98 9 12 3.2e-05 0.0032 18.8 3.1 1 23 283 305 283 305 0.98 10 12 0.00025 0.025 16.0 0.2 3 23 310 330 309 330 0.97 11 12 0.00022 0.022 16.2 1.5 3 23 371 391 370 391 0.99 12 12 1.2 1.2e+02 4.4 0.1 3 23 399 422 398 422 0.83
Sequence Information
- Coding Sequence
- ATGCCTCCAAAACTTAAGAGATTAGGAAGGCCGCCAGGTTCTAAAAATAAGAAGCCCTCTGTAAAAGACCTGGCAAATAAGTTGGCTAAGATAAAACGGAATAATATTGAGGATTCTGCTAGAACACCTACTGATTATCAATGTACAGTATGTGACAAATATTTTCCATCCAAGAAAGCACTGCTGAAACATAAGGCGATAGAAGTATCTAAAGTAATTTATACAAAGTCACCATTCAGTTGTAAAGAGTGTCGCAAGAAATTCAGATTTGAAAAAAGCTACCAGAAGCATCTACAAGAGGAACATTCCAAATTACCGACCAGTGTTGCATGTGACAAATGCCCTGTACGCTGTCCTGATGTGGCTGGTTTAAAGGATCACATAGAAAAAGTTCACGAAaggaagatttttttatgtccACATTGCGAAAAGGAGTTCGTAAGGTCTTCCCATGTTTTAAGACACCTGGCGCAGAGTGGATGTGATGGACAGAATCCTTCTCATTATTCTTGTGAAGTGTGTGGGGCAAAATTTTCAAGAAAAGATAATTTAACTGTACACATTCGATTACAACATGTTTTCAGAAAAGATTATGTTTGCAAGTACTGTAAATTCAGTACCAAAAACTTCTCTAAACTAGTGAACCATTGGCATAAATATCATTCAGaaaCACCTGATCAATATCAGTGTGCCGAGTGTTCAAAATGGATCAGTTCTCGTGCAGCTATGATGAAGCACTTGGAAATACATGGTGAGAAGAAGTATTCCTGTGacatgtgtGGATACTGCACGTACACAGTGGAGGTGATGCGCCGTCACATTCTTACGCACGTAGAGGACAAACCACACAAGTGTAATTTGTGCAACCGATCTTATATACAGCGTGTTCAACTGCAGCGACATCTGGAGAAACATATGGGCAACATGTGCTCTGAGTGCGGCCAAACATTTGCCTCCAGAGCTAAaatGCTGGTACACTTGAGAGAGCACATGGGATTGGAAAAATTGCGCTGCCCACTTGAATCATGTCCATATTCCACTAAAGATTTCATTAATGAAGCGAGTTTGAATTTTCACCTAAACGTGCATTTAGACAATAAGCCGCACGGCTGCGACGTGTGCGAGAAGAAGTTCCACTCGGAGATAAACCTGAAGCGTCACCTGGAGACGCACACGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGCGCCTACGTGCGCGGCGAGCAGCTCATCCGCCACGTGCGCAAAGCGCATCCCGACGCCTTCCGCGCGCACCTGCACCACGTGCGCACCGTGCTCGGTGCAGGAAACACCACAGAGAGagtaaaaaaatctgaaatagAATCGATCCTCAATTTATTGGATGCAGAGGCTGATCGTATTTTGCAAGGGTACAGCGGGTCGGGGGTGCTCTATGGTGGCATGCAGCAAGATGTAAACGTTCCCATAGAACAAACGACAGAAAAAaaaCCGAACAACCCTCTAATGTCGGAAGAAGATTTGGCTGATAATTTGAGTAAACTAATTACGCAACTCATCGATCACGAGACACTCAGTCTGTTTGGCTGGCCCGATGAGACTGTCGATGTGgtattggaaaaagtaatagagCAATGCGGGGCTCGTCCAGCGGATCGTGAGAAATGGACTCGAGTACAGCGCCTGCGGGAAAACACAAAgcatttgtttttgtatgtcaTCGAGGATAAGAACATCGCGCGGATGCTCGATACACACACGATCGATCAAATCGTCACACACATACTGAAACAAGTCTCTGAAGATGATTCCAtagaaactaaataa
- Protein Sequence
- MPPKLKRLGRPPGSKNKKPSVKDLANKLAKIKRNNIEDSARTPTDYQCTVCDKYFPSKKALLKHKAIEVSKVIYTKSPFSCKECRKKFRFEKSYQKHLQEEHSKLPTSVACDKCPVRCPDVAGLKDHIEKVHERKIFLCPHCEKEFVRSSHVLRHLAQSGCDGQNPSHYSCEVCGAKFSRKDNLTVHIRLQHVFRKDYVCKYCKFSTKNFSKLVNHWHKYHSETPDQYQCAECSKWISSRAAMMKHLEIHGEKKYSCDMCGYCTYTVEVMRRHILTHVEDKPHKCNLCNRSYIQRVQLQRHLEKHMGNMCSECGQTFASRAKMLVHLREHMGLEKLRCPLESCPYSTKDFINEASLNFHLNVHLDNKPHGCDVCEKKFHSEINLKRHLETHTLDRPRRCMYCVSARAYVRGEQLIRHVRKAHPDAFRAHLHHVRTVLGAGNTTERVKKSEIESILNLLDAEADRILQGYSGSGVLYGGMQQDVNVPIEQTTEKKPNNPLMSEEDLADNLSKLITQLIDHETLSLFGWPDETVDVVLEKVIEQCGARPADREKWTRVQRLRENTKHLFLYVIEDKNIARMLDTHTIDQIVTHILKQVSEDDSIETK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00824097;
- 90% Identity
- iTF_00824097;
- 80% Identity
- -