Basic Information

Insect: Spilosoma lubricipeda
Gene Symbol: -
Assembly: GCA_905220595.1
Location: HG992274.1:34210860-34213406[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.089 8.7 8.0 0.5 5 21 220 236 218 237 0.94

2 12 0.0022 0.22 13.0 0.7 2 23 255 276 254 276 0.96

3 12 7.7e-05 0.0075 17.6 2.3 1 23 301 323 301 323 0.99

4 12 3.2e-05 0.0032 18.8 1.2 1 23 331 354 331 354 0.96

5 12 0.0035 0.34 12.4 0.6 1 23 360 382 360 382 0.98

6 12 0.018 1.8 10.1 8.7 1 23 388 410 388 410 0.97

7 12 4.7e-07 4.6e-05 24.6 1.6 1 23 416 438 416 438 0.95

8 12 2.2e-05 0.0022 19.3 0.9 1 23 444 466 444 466 0.99

9 12 1.1e-06 0.00011 23.5 0.2 1 23 472 494 472 494 0.98

10 12 2.3e-05 0.0023 19.3 0.4 1 23 500 522 500 522 0.99

11 12 4.3e-05 0.0042 18.4 2.2 1 21 528 548 528 550 0.96

12 12 1.5e-06 0.00015 23.0 0.4 1 23 556 578 556 578 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.089	8.7	8.0	0.5	5	21	220	236	218	237	0.94
2	12	0.0022	0.22	13.0	0.7	2	23	255	276	254	276	0.96
3	12	7.7e-05	0.0075	17.6	2.3	1	23	301	323	301	323	0.99
4	12	3.2e-05	0.0032	18.8	1.2	1	23	331	354	331	354	0.96
5	12	0.0035	0.34	12.4	0.6	1	23	360	382	360	382	0.98
6	12	0.018	1.8	10.1	8.7	1	23	388	410	388	410	0.97
7	12	4.7e-07	4.6e-05	24.6	1.6	1	23	416	438	416	438	0.95
8	12	2.2e-05	0.0022	19.3	0.9	1	23	444	466	444	466	0.99
9	12	1.1e-06	0.00011	23.5	0.2	1	23	472	494	472	494	0.98
10	12	2.3e-05	0.0023	19.3	0.4	1	23	500	522	500	522	0.99
11	12	4.3e-05	0.0042	18.4	2.2	1	21	528	548	528	550	0.96
12	12	1.5e-06	0.00015	23.0	0.4	1	23	556	578	556	578	0.98

Sequence Information

Coding Sequence: ATGGAAATGAATGTggaattatttgataaaatatgcCGAGTCTGTTTAATACAATCTATCGAATTGAAATCCCTGTTTACAAAGACAGATGGCGACGATCGGAGTTTACttgaaatactagcttttacggCAAATATCGATGTTAAAATTGAAGACAGCCTTCCGAAACAGGTGTGTAAGGATTGCGAATCTATTATATGTAAGGCAGACGCGTTTATACGTCGATGCCATGAGTCTGAGACCATTTTACATAATGTTTACCAAACTACAAATACAGTCACGGAGAATTCAACAAAATGCCTTGAAAACTATTCAATTAAGGATGAAAAGACAGATTTGAAAGAAAAACTAAGTGAGTATGGTACTCTTTTATCTCCAATCCCTTCAAATAGCGGCTCGCACTAtgatttaataaagaaaaacatagaGTTTTCGCCATGTTCAACACCAGCTCTTAGTCTAAACAAATTTACCCCGGAATTCTTCGATAAAGAGCATCATACAGTTAAGAAAGAGACAATAAGTAGTAATGACGAAGAGGATCAGTATTTGGGCCATTTTGATGATGGTGATCATTTTGAAAATCCTTCAGAGAGCCCGGAGAAGAACCATGAACCGaaaacggtgaaaaataaaatacgtattCGTTATGAATGCTACTGTCACACACAATTCTCGAAAAAAGATGATTATGAAGCTCATTTAAAAGACAAACAGTGTGATGcgttcaaaataaaatcaaataaaggtAAACATAAAATTCCATGTACAAAATGTGAAAAAGAATTTACTTCTTTTAATGGTTGGAAATATCATCAGAATTCTCATAGAGAGAGTAGTCCGATTATCCAAAATATGGACAGtaacaaagacacaaatttaaacaacaaaacGGAATGCTTCCAATGTTCATTTTGTttacgaaaatttaaaaataaagtctcACTTTCTGCTCACATACAGAAGCATGAAGAAACCGATAGTATAAAACATGTATGTGAAATCTGTAAACGAGAATtcaaatataaagcttatttaGAAAACCATGTACGAAATGCACATTCCCGGACAAATGGATTCACTTGTGATATTTGCATTAAAAGTTTCTTGAATAAAGAAGCTCTACAGGCTCACAAGAAAAGTCATGAAAGTGAAAAGAAACACTGTTGTTCCGTTTGCAGTAAGACGTTTCAGATGTTATGTACTTTAAAGGAACATATGCGGACACACACTGGTGAAAAACCTTTCTTATGTTTCCAGTGTGGGAAGGGCTTTAGTCAGAAGACAAACTTAGCTCAGCATATGAGAAGACATCAGGGATTAAAACCTTTTAAATGCGAGAGTTGTGAAAAAAGATTTGTCTCCAAAGGCGAGTTAGACGCTCACACCCGTAAACACAGCGGCGCTCACCCATTCGTCTGTGACGACTGCGGGAACGGCTTCACAACTTCCAGTGCTTTAGTCAAACACCGTAGAATCCACACCGGAGAACGCCCTTACCAATGTGATCTATGCCCCATGAGATTTGCAGCATCCGGGACTTTGAAGAACCACAGGAGAACTCACACTGGGGAAAGACCTTTTCAGTGTTCATATTGTGAGAAGGCGTTTGTACAAAGAAATGATTTAATTTCTCACATTAGGTGTCATACGGGTGAGCGGCCATATATATGTAATCAATGTGGACAGTCTTTTAGAAAAGCTAGTGGATTGAAAGTTCACGTTAAAATGCATGTTAAGAACCCTGTAGTGGGTGTAAATGCGTTATTGACTAGCATGCATTGTATGGAGCAGTGA
Protein Sequence: MEMNVELFDKICRVCLIQSIELKSLFTKTDGDDRSLLEILAFTANIDVKIEDSLPKQVCKDCESIICKADAFIRRCHESETILHNVYQTTNTVTENSTKCLENYSIKDEKTDLKEKLSEYGTLLSPIPSNSGSHYDLIKKNIEFSPCSTPALSLNKFTPEFFDKEHHTVKKETISSNDEEDQYLGHFDDGDHFENPSESPEKNHEPKTVKNKIRIRYECYCHTQFSKKDDYEAHLKDKQCDAFKIKSNKGKHKIPCTKCEKEFTSFNGWKYHQNSHRESSPIIQNMDSNKDTNLNNKTECFQCSFCLRKFKNKVSLSAHIQKHEETDSIKHVCEICKREFKYKAYLENHVRNAHSRTNGFTCDICIKSFLNKEALQAHKKSHESEKKHCCSVCSKTFQMLCTLKEHMRTHTGEKPFLCFQCGKGFSQKTNLAQHMRRHQGLKPFKCESCEKRFVSKGELDAHTRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGERPYQCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGERPYICNQCGQSFRKASGLKVHVKMHVKNPVVGVNALLTSMHCMEQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00823273;
90% Identity: -
80% Identity: -