Slub007185.2
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992278.1:16847868-16857048[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0064 0.63 11.6 1.1 3 23 695 716 694 716 0.96 2 23 0.39 39 5.9 0.3 1 22 1102 1123 1102 1123 0.95 3 23 8.6 8.5e+02 1.7 0.4 1 22 1165 1186 1165 1188 0.82 4 23 0.0025 0.24 12.9 2.1 3 22 1199 1218 1199 1218 0.96 5 23 0.7 68 5.2 0.0 3 23 1227 1248 1225 1248 0.89 6 23 0.02 2 10.0 0.2 3 23 1268 1289 1266 1289 0.96 7 23 0.0022 0.21 13.0 2.5 1 23 1295 1318 1295 1318 0.95 8 23 0.14 14 7.3 0.0 1 23 1345 1368 1345 1368 0.90 9 23 0.0063 0.62 11.6 3.5 1 23 1373 1395 1373 1395 0.97 10 23 0.09 8.8 8.0 0.1 1 23 1401 1424 1401 1424 0.95 11 23 0.0027 0.26 12.8 1.3 1 23 1437 1459 1437 1459 0.97 12 23 0.0002 0.02 16.3 1.8 1 23 1512 1535 1512 1535 0.97 13 23 0.0097 0.95 11.0 1.1 1 23 1595 1618 1595 1618 0.96 14 23 0.0027 0.27 12.7 2.1 2 23 1645 1667 1644 1667 0.95 15 23 0.1 9.9 7.8 0.1 2 23 1673 1695 1672 1695 0.93 16 23 0.0044 0.44 12.1 0.1 1 21 1739 1759 1739 1760 0.95 17 23 0.00048 0.048 15.1 1.0 1 23 1770 1792 1770 1792 0.93 18 23 0.0001 0.01 17.2 0.3 2 23 1882 1904 1882 1904 0.93 19 23 4.6e-07 4.5e-05 24.6 1.4 3 23 1911 1931 1910 1931 0.98 20 23 0.0057 0.56 11.7 1.1 1 23 1950 1972 1950 1973 0.95 21 23 0.14 14 7.4 0.0 1 23 1998 2020 1998 2020 0.97 22 23 0.032 3.1 9.4 0.6 1 23 2026 2049 2026 2049 0.95 23 23 0.00038 0.037 15.4 0.7 1 23 2057 2080 2057 2080 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCACGTCCTCGCTTCAAAAATCAAGGATTGCGTGTCCGTAGAGgTAAACGAAAATGATGAGCTGCCCACGAATGTCTGTAGAAAATGTGTGGACAATGTCAATAATTGGcataagtttaaaaatgtttgtgaaaGGACTCAAAACAAACTACAGTCTCTgattaataaagatggcagccAACTAGAAGAGGTTCAAGTAAAGAATGAACCATTATCTGATGAAGTCTATGATGATGGAGTTGTTATTGAGGGCTCATATCCAGATAATGAGAATGTCAGCGTGGCAAATAAAGTTCAACCTGAAGGCCCTCCAATTTTGGCTTCCTTGGGACTCACACCTAGGAGTGATAAGAAGTGTGTGGATCCTCGAATGGATTGGCACCGAGTCTGTGCGATTTTGGACATGGTTCAAGACAATGAGGTGATTGACTCTCTACAATCAAAGGAAGAGTGTGACATTTTGCAACACTCTGATCATGACTCTGACACAGAGACTGAACTTCAACCAGATATTGAAGATGAATATGTAGATAGCAAAAAAGGCTAtgcctgtaaaaataataagattataTCGAAGAATCCTAAACTGTCACCATCTATgaataacattaaaatcaaaGAAGCTCAGCAATTAAGGAAACGAAAATTAAATTATCCAAAACAGCACTGTCCATGTCCTAAAAATGCTTGGCAATTGTTATTCACTGATGACCTACTTGAATTAATAGTCAACTCCACTAATGAATATATTGTCAGGAATGAAAAAAGTGAGTCCATTGCAACTAATGTCAGCGAAATAAAAACACTCATCGGCATTTTGTATTTGCATGGAGTAATGCGACCAACGCATGAAAAAATTAATGACCTTTGGCGTAGTGACCTTGGGGTACCATGCGTTAGAAACTCCATGAAATACGAACGATTTAAATTCCTTTTACAAAACTTAAGTTTTGATCAAGAGGGTGGCGACAGTATTATACAGTTTGATATAATGAAACGTATGCGTAAGGTATTTGAAATCTTCACCATGAATTGCAGAACAGCTCACGGGATTGGAAGTACTGTGGTTATTGATGAGGTTATCATTCCAGTTTATGGACCTTGCCCATTTCGTTATGATATTGATAAGAAACCACTGAAGCGCGGAATAAAGATGATATTGCTTGTAGACACATCAACATTCTACATAAGCAATTTAGACGTTATTACAGACCCTTACTTTGGTGCTGAAGAAATGACTAAAAAGTTAGTTCAGCATTTAGCTGGTACTGGTATATCCATCGTAATGGATAGCTGGTTTACATCTTTAACATTAATGGAAAGGCTTAGGAATGAGTACCAGCTATTTACTATAGCAGCATTAAATCCGTCCAATGACTGGATTCCACCATTGTTCCTTTCTCAGTATAGGAAATGTAGAACATTCATGTCTGGATTTATTGATCATGACATTTCACTTACATCTTACGTTAATTCTgatttaaaagcaataaatataataactaatgAGCCTAGATTTTACAGAAAAGGTCATGTGAACCAAACTACTGTTGTGtctgtgtataagaaaaatcaaTCAGCGGTAGAAGTGGTTGATGTTGTTATGAATTATTATACAACTATGCAACATACTAATGATTGGACTTTATCATTATtctttacattattaaatattgcttCTGTTAATGCCCAAGTGCTATGGAGCTCTCAAAATACTAATGTGGCTCAACGACGCGCTTTCATAAAGGAATTGGCCCTAAGTTTAATGGTGCCTGAAGAGAGACCACCTATATCCACAAACAAATTAAGAGATGGAGTGGAAAGTGAGAAGGACGAAGAAGAGGAAGAGGAAGAAGAATTGACAGAACCTGCTCAAACATTCCCCAAAATGCCCCACATGCCGGAAGTGTCCATAACAGTAATGCGACCTACTGGCGAGACCTTGCATGCGCGCCAAGGTATACATCAATTAGCTTCTAAAGACTGTCTTGTCTGTGGCCGCACTTACAGATATTCCCACAATGCTCGTCGACATGAGCTTACCGCTCACAGCTTTGATAGGTATACTAACAAAATAACTCCAAAAAAACCACTAGGTCATTTGCAGCCCAAACTAAGACCTAACCCATTTAACCCTAAAGCGCGTTTGATGCCGAATCGTATTAGTCATAAGATGCAATATATGTCCAAAAACATCCCAACAAAAGTGGTACCTATAAATAAGGTTATCACACCTCAGAAACCAATACCGATAAAATCAGCTAAAACATCGCAAAACAATTTGCCTTATCCACTACGTATTAAAGCACTGAAAGATTTACAGATTAAGAAAAAGGAACCACAAATTTTAAAGACTTTGTTAACTTCTAAACCAGAAGTTCTTGTTTCTGAACCCGAAATAATAAATTCTGGACCTGAAAGTCCAGAGACACTGATATCTGAACCTGAAATTGCTTCGTTCCAAGTAGAAGCAATACTTTCGGAACCCGACGCAGACGTCTACGACCAACAACAGGGTGACGAGGAAGTTGATGGAGACATGCATAATAATCAAGGTCAGAATTATGATACGGTTGACATGAATTCTGAAAATGAAATTGAGATCGCACGTCAACAAGGCGACGAAATAAATGGCGAAGAACAAGCTGATGGTGATGAAAACATCGATCAGAATGATAATATGGATGGTGGTCAAAGTGACAACGAACAAGAAGCGGACGATGCAGAAAGTCAAGAAAATGTAGACTTGGAGGAGGATGGCTTAGAAATGAAaactgaaaatgaaatgaaggAAGGTGGACAATTGCAAGAGGGTAGGGACCACGAAGAAATAGAAATGAATCACGATGGGAACGATGATGAAGATGACGATGATTTACCAATGACGATACAGCCAGTAGTCGAAATTAATGAAGACTTGCAGGCTGATTCGTTTAACACCGATGTAGCTGATGGTGATGAACTCGATGACAGTATTTATCCTAACGAGACCGTTGATCCTAATGAGACTGTAGACGAAGAGGAAGTGAAAGAACTCGATCCTGATAAAACATACGTAACAAAAACGCAGAGGGACTTCATTTTAAAGTATCGTGACGTTATTGAGCAAATCAATACAAAGCGTTGTTTGTGTTGTGACAGAGAACATCCGCGCCGAAAAGCTGTTATACAACACTTGCAGAAAAATGGGCACAAAGTACCTAAGCACACATGCTACAATTGCGTTGTAACATTTGGACATATTGGTGCCTTGCTCAGCCACATGAGGTCAAATTCTTGCACTGATTTGTGGAAGATTATATATAACGAAAATGGTATTACTGATGACTTGGTTCTAGAAGATGAACCCAAGGAGGTTAAAGTTCagtataaagatatttttaatgcTAGATCCTATGCTTGCAAACTATGTCCAGCTAAATTTCAGCTCAAACAATTTATAATGAAACATGTTTTGGATACTCATGAAGATGGACAATCGAGAGTGCCTCTCGGATGTGTGCATTGTAGAGCGAGGTTTAAGGACAAGAGTTTGCTTAAAAAACATATTCGTAAAGGTGATTGTACAGTTTATGTAGCTTGTGACTTATGCCCAGAAACATTCGGAAATATGCAGAGTTTTAATGATCATGCATTAGCCATTCATGCTGGTAGTTTTGAATCAGATAGCCAGAGCAAATGCGTTGACGGTCGCCCTACTGACTGTCCACTATGtggtaaaaaaaatagcagCTATCCGAATTTagtaaaacatttgaaaattattcACAATGAGGAAACACCTCACTACTGTCAGCACTGCGACTCTAAATTTGAACAAGCTGCTGATCttaataaacacatttacaTGGAACATTCTGACCGGACTTTAGGCATGCCGCAAAAGAATGAGCCGGATATGTCCATTGTTAAAGAAGAGGCTGAAGAGTATCATTATTCCTGTACTGAATGTAACGCCATATTTGAAACTGTCGACGCGTGGACAGACCACCAAGTTGCCGAACACAACCAAGTGGCTCATCACTGTGACCAGTGCGACAAGAAGTTTTTGCGTCCCTCTGAGCTTGCAGAGCACAAGAACACACATTTGCGGGTAAAGTTTTACCCTTGCAGCGTTTGCGCCAACTCTTATAGTACCCCTCAAAAACTTTCAGAACATGTACAACAAGCCCATCCAGGAATCGGTGCAATAGCTGCGGCAGATTCGGAATTCTTTTGTGATATCTGCATCAGATCATTTAAAAGTCGTCAAGCATATTCAAATCATATGCGTATACATGCTAAAGTGCCTACGACTAATCGAAAACCAGGAGACACTTCTTCTAACAAAGGCTTTTCGCCCTCAATTATAGGCAAACCTATCAAACAGGTATATCCCATGGTCCAACCTGGCTTTGTCTCATTTAAACCTCATTACAATATTCCTAATGCTCCATATTCTTGCGACATTTGTGGGAAAGGATTCATGCATAAAAAGAACATATGGAAACACAAGAAAGTTTTACATGCAGATATATTAAACGAAAGAAATGACAGTGAGGAGAATACTATGCAAGCCTCCACTGAAGAGGACGAACTTAATTTAGATGAAAACGGCGCAATTCTCTCGACGCCACAGTTTAATAGTTTTAACTTTGGCAGTTTTGCCAATAATATCCAACAAACACAACAAGAAACTATGCCTTATTCATGTGAATTATGTCTAAAACGATTTCCACTTAGAACCAGTTTATGGAAACATAAACGTGCCAAACATGGAATTATTAATCCTAATTCTAGTGGCGGCAACGATTCACAAACGCCGTCGGCCAGCGGGGAAGGAAGTAGTAGATCAAGTTGCACAATATGTAGAATTACGTTTTCGGATAAGAAATCTTATTATCGCCACCGAAAGAACGTTCACAAATCCACTGTTCAAATGTGTAAAATATGTGGAAAGCCCCTTAACTCGACATTAGAACTTTATGAACATTTGAAAGCTGCTCACGCGAGAGAACTTTTAGGATACAATGCCAACCAAGGTTCGAGTAAATCTCTCGAAGTAGCACAAGAGTTGGAACCTGATTATGAGAACGATCAAGAATCAGTCGATCCTAGCGTTGATTATCAGGCTAGTTACCCTTGTGACATCTGCGGCAAACAATTTGTGGGTTTGTTAGCTTTGCAGAACCATCAGTGTATTAATCAGGCTCCACCTCAACCACAAACCTTTGATTGTGAGATTTGTCACAAAAGCTACACATCAATATCAGCTCTAAAGAGCCACCGTGGATGGCACTTACGATCACCAGATGGTAAAGCAGCTGCTAACAATAGTGGACTTTGGATGCCTCAGCACAAGGTCACAAGTAAAATTAGCAAACATGAAGTCATCGATCCAGTACAACTTGCTAAAGTTACACATTCCAGTCCTGCAGCTGCAGTAGCTGCTAAAAGAAGACTCCCACCTGAGGTCGAAGTCACCGTTGTTAATCCTAATAAAAAAATGCGGTCTGATGATTCTGTTGAATTAGAGCAACAAAACTCTAGTTCAGCTGAAGATAGATATTGCAATATTTGTGACAAGGAGTTTACAAAACGCGCCGCTTACCAGCGCCATATGGATGAGGTCCATCAACCGAATTCGGTATTTTGTCCAGTGTGTGATAAAAGTTTTACACGAAAGTCTACGCTACTTATCCATATGAAGAAGCACTATGAGAGTGGTGAAGGAAGCTCAAGTATGGTTGGACAAGTCGAGGAGGATTTGCATACATGTGACTTATGTGGAGCTCAATATGACGATGAAGAATCGCTGAGAGCACATCGAATTAGGCATCATGGTGAGGAATCTGAAGAAGACGATGACGATGATGGAGACGATGGCAACGTGCCTATTCCTCCGCCGGGTGAGTTCACTTGTGGACAGTGTGGAGATGGGGTAGCCACACCACGCGATCTCATTGCTCATCGCACAATGCACTCTACTCCCACCAAATTCTTCTGTAACATATGCAAAGTTTACTTTGCAAGAGCATTAGATCTCTCTTCCCATACACGAGCTAGACATGCAGACAACGACAAGGTTTTCTTTCCTTGTGCCATGTGTGATAGATTCTACATGAACAAAAAGAGTTTGCAGCGACACATTGAAATGACTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPHVLASKIKDCVSVEVNENDELPTNVCRKCVDNVNNWHKFKNVCERTQNKLQSLINKDGSQLEEVQVKNEPLSDEVYDDGVVIEGSYPDNENVSVANKVQPEGPPILASLGLTPRSDKKCVDPRMDWHRVCAILDMVQDNEVIDSLQSKEECDILQHSDHDSDTETELQPDIEDEYVDSKKGYACKNNKIISKNPKLSPSMNNIKIKEAQQLRKRKLNYPKQHCPCPKNAWQLLFTDDLLELIVNSTNEYIVRNEKSESIATNVSEIKTLIGILYLHGVMRPTHEKINDLWRSDLGVPCVRNSMKYERFKFLLQNLSFDQEGGDSIIQFDIMKRMRKVFEIFTMNCRTAHGIGSTVVIDEVIIPVYGPCPFRYDIDKKPLKRGIKMILLVDTSTFYISNLDVITDPYFGAEEMTKKLVQHLAGTGISIVMDSWFTSLTLMERLRNEYQLFTIAALNPSNDWIPPLFLSQYRKCRTFMSGFIDHDISLTSYVNSDLKAINIITNEPRFYRKGHVNQTTVVSVYKKNQSAVEVVDVVMNYYTTMQHTNDWTLSLFFTLLNIASVNAQVLWSSQNTNVAQRRAFIKELALSLMVPEERPPISTNKLRDGVESEKDEEEEEEEELTEPAQTFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRTYRYSHNARRHELTAHSFDRYTNKITPKKPLGHLQPKLRPNPFNPKARLMPNRISHKMQYMSKNIPTKVVPINKVITPQKPIPIKSAKTSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDADVYDQQQGDEEVDGDMHNNQGQNYDTVDMNSENEIEIARQQGDEINGEEQADGDENIDQNDNMDGGQSDNEQEADDAESQENVDLEEDGLEMKTENEMKEGGQLQEGRDHEEIEMNHDGNDDEDDDDLPMTIQPVVEINEDLQADSFNTDVADGDELDDSIYPNETVDPNETVDEEEVKELDPDKTYVTKTQRDFILKYRDVIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTDLWKIIYNENGITDDLVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSRVPLGCVHCRARFKDKSLLKKHIRKGDCTVYVACDLCPETFGNMQSFNDHALAIHAGSFESDSQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNEETPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGMPQKNEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCANSYSTPQKLSEHVQQAHPGIGAIAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDTSSNKGFSPSIIGKPIKQVYPMVQPGFVSFKPHYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDELNLDENGAILSTPQFNSFNFGSFANNIQQTQQETMPYSCELCLKRFPLRTSLWKHKRAKHGIINPNSSGGNDSQTPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSLEVAQELEPDYENDQESVDPSVDYQASYPCDICGKQFVGLLALQNHQCINQAPPQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPVQLAKVTHSSPAAAVAAKRRLPPEVEVTVVNPNKKMRSDDSVELEQQNSSSAEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSMVGQVEEDLHTCDLCGAQYDDEESLRAHRIRHHGEESEEDDDDDGDDGNVPIPPPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARALDLSSHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIEMTH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00851013;
- 90% Identity
- iTF_00823266;
- 80% Identity
- -