Slub030498.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- PLAGL2
- Assembly
- GCA_905220595.1
- Location
- HG992301.1:5962934-5968189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.18 17 7.0 2.3 1 23 52 75 52 75 0.94 2 29 0.0059 0.58 11.7 0.3 2 23 102 124 101 124 0.94 3 29 0.0072 0.71 11.4 1.6 1 23 146 168 146 168 0.98 4 29 9.7e-05 0.0095 17.3 0.5 1 23 172 194 172 194 0.97 5 29 0.036 3.6 9.2 2.2 1 23 199 222 199 222 0.92 6 29 3.4 3.4e+02 3.0 0.3 3 20 231 248 230 252 0.77 7 29 5.6e-05 0.0055 18.1 2.3 2 23 260 282 259 282 0.96 8 29 0.00022 0.021 16.2 2.5 1 23 288 310 288 310 0.98 9 29 0.00035 0.035 15.5 0.5 1 21 316 336 316 337 0.96 10 29 0.15 15 7.2 0.0 1 23 384 407 384 407 0.92 11 29 0.18 18 7.0 0.0 2 23 434 456 433 456 0.95 12 29 0.041 4 9.0 1.5 3 23 480 500 478 500 0.91 13 29 0.28 27 6.4 0.2 1 23 504 526 504 526 0.93 14 29 0.029 2.8 9.5 4.1 1 23 531 554 531 554 0.97 15 29 1.2 1.2e+02 4.5 0.9 2 19 562 579 561 584 0.76 16 29 2.9e-05 0.0029 19.0 1.8 2 23 592 614 591 614 0.96 17 29 0.00084 0.082 14.4 0.7 1 23 620 642 620 642 0.98 18 29 1.6e-05 0.0016 19.8 1.3 1 23 648 670 648 670 0.99 19 29 0.14 14 7.4 2.3 1 13 676 688 676 690 0.91 20 29 0.13 13 7.5 4.2 1 19 746 764 746 769 0.94 21 29 0.0021 0.21 13.1 0.2 2 23 795 817 794 817 0.96 22 29 1.6 1.5e+02 4.1 3.4 2 23 840 861 839 861 0.96 23 29 0.016 1.5 10.4 0.9 1 19 865 883 865 887 0.95 24 29 0.001 0.1 14.1 1.3 1 23 892 915 892 915 0.96 25 29 0.19 18 7.0 1.8 1 23 922 945 922 945 0.96 26 29 0.0005 0.05 15.1 2.4 2 23 953 975 952 975 0.96 27 29 4e-06 0.0004 21.7 0.6 1 23 981 1003 981 1003 0.98 28 29 2.3e-06 0.00023 22.4 0.7 1 23 1009 1031 1009 1031 0.99 29 29 0.00054 0.053 15.0 2.6 1 23 1037 1060 1037 1060 0.97
Sequence Information
- Coding Sequence
- ATGGCAAAGAAACGACATAAAACAAAGCTATTGGACGGACTAGTGGCAATAGAAACAAATATAAGCAGGGAGATTACtaaacatttacataatataaggACCGTCCTCTTGAATTCCAACGCTACTCCAATTCGAAGTTATAATGGGATAGGCTACACGTGTTGCTTTTGTTCAGAACAATACCCTTTGCCAAAAGATCTAAAGAAACATACCCTTGAAAATCACGATAAAACTGCCAAAGTAAAGTTTATGCAAGGATGTCCTTTGTCCACATATGTCGTCAAAATAGATATCACAGATTTAAGTTGTGAACTTTGCGGTACTGAATTCaaagatctacaaaaatttATCGAGCATTTACAAAATGATCATTATAAAACACTCCACACAGATATAAACGATCACATACTGCCATTCAAATTTGAAAGTGAAGGATTCACTTGCGTTATTTGTTCTAAGAACTTTGAAAGGTTTAAAGCAATACATGAACATATGAATATCCATTATAGAAATTTCATTTGCGAGGTTTGCGATTCACCTTTTGTCAATAAGAGGACACTCAAAAGTCACATGTCGAGACACAAACAAGGAGAATTCAATTGCAGTTTTTGTCCGAAAGTTTTTGACACCCAGAATAAAAAAACCAACCACGAAAAGTTCGTCCACACGGGCGATCAAAGAAGAAATATTTGTCCATACTGCAAGGAAAAATTTCTTAGCTATGCTAAAAAAAATGAGCACATGGTAGAAGAACATGGTGTGGAACCTCTAGTGCTGAAATGTAAAGCTTGCGATAAAACATTCAATAGACGAGATAAATTAACGCTCCACACGAGGCGAGACCACTTACTTGAAAGGCGGTTTGAATGTGACCATTGTGACATGAAGTTTTATGGAAAAAGAGACCTTAATACACATATGGTTAAGCATACAGGAGTGAAGCAATATAGGTGTGAAGTATGTCTTAAAGCGTTTGGGAGGAGACACACCTTGAGGGAACATTTGCGTGTCCGACGTAACGCCATCGAAATGGATAgtgaaaaacaaatgaaaccCAGGATATATGAGTTGGAAAAACACCGCAGTAACGTACGAATTATCATTCAATGTTCAAACGCAACCCCCATTAGGTGCATGGGAGGCATCGGTTACGCCTGCAGCTTTTGTGGAGACGAGTACCCAGAACCtgcagatttaaaaaaacatacgaTCGAGGCACATgatgataaaacaaaattaaaattcatgGCTGGAAAAATGATGTTCTCATATTTAGTTAAACTTGATATTACGAATTTACGTTGTACTATATGCGATGCTCAAATCGAATCGTTAGATCTTTTAACCGATCATCTCATCAAAGACCATGGAAAACCACTGCATACAGATATCCAAAGTCACATAATGCCTTTTAAATTCGTTGATGACGTACTCAAATGTATTTTCTGCTCAAATGTATttaacaaattcaaaaatttgCAGCAACATATGAACGTACACTTTAGAAACTTCGTTTGCGAGTTCTGTGATGCTGGTTTTATAAACAGGCATATCTTATCCGCCCATACGGAAGCACACAAACTGGGAACTTTTAAATGTGATCTGTGTTCAAAAGTTTTCGACACGCACAGGAAAAAGAAGAGCCACGTGAAATCAGTTCATGTACATGCAAACTTACTCAGTAAATGTGGGTACTGTAATCTCAAATTTACGAATTACAAGAGGCGAGATCTTCATTTAGTTAAAGTACACGGAGTACATTTAAAGGCTGTCAAATGCCACGCCTGTGACAAGTCATTTGATAACAAGAGCGCGTTGACAATACATACGAAACGAGATCACTTAATGGAGAGGAGATTCAAATGTACAGAATGTGACATGGACTTCTTTGGTTCTAATGAGCTCAAGTTGCATATGGTGAAACATACGGGCTTGAGAGAGTTCAAATGTGATGTATGTTTGAAATCTTATGGAAGAAAGAAAACTTTGACGGAACACATGAGAATACACAATGATGATAGGAGATTTAAATGCGAGCATTGTGGGCAAGCGTTCGTGCAGAAGTGTGAAGAAGACGTAACTGTCAATATTGGATCTGAAACGTCCAACAGAGTTCTTAATACAGTAGCAACAATTAACGATATTAGAGAGGAGGTCGCTAAAAACCAGAACAATTTAAGACAATTACTCAAGTACACGAATGCGACACCGATACTTCGCCAATCAGAGATCGGATATGTTTGCTATTTCTGCGACAAACACTGTGTCGATCCAGCATCATTAAAGACCCATTGCTTAGAATTCCATGGAAATGGCAAACTATCTGCGCATATGAGGCAAAAGAATATATCCTTTTATGTGAAACTGGATATCACTGGACTCGTATgcaatatttgtaacaaaaatataaataccttGGAAGAATTATACAGTCATCTAAAAACCGAACaccaaaagaaaatatttactgaTCATAAGAATTTAATCATACCTTTCAAGTTCGAGACTGAGACTTTAAGTTGCTACATGTGCTCgaatatatttgaaaagtttaaaaagctaATGGAACATATGCACAAACATTATGGGAATTATATGTGTGAAATATGTGGAGCTGGTTTCGTTACACATGGCTCTCTAGTCAGCCATTTCGAATGCCATAAAGTAGGTACTTTCCAATGTGACATCTGCAATAAACCATTTAATactttgtacaagaaaaatagcCACGTGAAAAACGTTCATAAACCGAAAAGTAAAAGGTTTAGGTGTGATTTTTGCACTGAGAGGTTTACGGAAGCGCAAAAGAGAAATGTGCATTTATCAAAGACCCACGGAATAACAAGTCATCATATCAAATGTCGGTCTTGCGACAAGACTTTTAGCTCTAAATGGTCGATGACACTTCACACGAGACGACAGCATCTCATGGAGAAGAGATTTAAATGTCCAGATTGCGATATGATGTTCTTTTCTGCGGATGAGCTAAACAAGCATAGGTTAAAGCATTCGGGTGTGAAGGAGTTTAAATGTGATGTCTGCTCGAAGTCTTACGCGAGAAGGACGACTTTGATAGAACACATGAGAATACATAACGATGACAGGCGGTTCAAATGCGATAATTGCGGACAGGCGTTTGTACAGAAGTGTAGCTGGAAAGGACACATGAAGAATAAGCATGGCCAAATCGTGTcataa
- Protein Sequence
- MAKKRHKTKLLDGLVAIETNISREITKHLHNIRTVLLNSNATPIRSYNGIGYTCCFCSEQYPLPKDLKKHTLENHDKTAKVKFMQGCPLSTYVVKIDITDLSCELCGTEFKDLQKFIEHLQNDHYKTLHTDINDHILPFKFESEGFTCVICSKNFERFKAIHEHMNIHYRNFICEVCDSPFVNKRTLKSHMSRHKQGEFNCSFCPKVFDTQNKKTNHEKFVHTGDQRRNICPYCKEKFLSYAKKNEHMVEEHGVEPLVLKCKACDKTFNRRDKLTLHTRRDHLLERRFECDHCDMKFYGKRDLNTHMVKHTGVKQYRCEVCLKAFGRRHTLREHLRVRRNAIEMDSEKQMKPRIYELEKHRSNVRIIIQCSNATPIRCMGGIGYACSFCGDEYPEPADLKKHTIEAHDDKTKLKFMAGKMMFSYLVKLDITNLRCTICDAQIESLDLLTDHLIKDHGKPLHTDIQSHIMPFKFVDDVLKCIFCSNVFNKFKNLQQHMNVHFRNFVCEFCDAGFINRHILSAHTEAHKLGTFKCDLCSKVFDTHRKKKSHVKSVHVHANLLSKCGYCNLKFTNYKRRDLHLVKVHGVHLKAVKCHACDKSFDNKSALTIHTKRDHLMERRFKCTECDMDFFGSNELKLHMVKHTGLREFKCDVCLKSYGRKKTLTEHMRIHNDDRRFKCEHCGQAFVQKCEEDVTVNIGSETSNRVLNTVATINDIREEVAKNQNNLRQLLKYTNATPILRQSEIGYVCYFCDKHCVDPASLKTHCLEFHGNGKLSAHMRQKNISFYVKLDITGLVCNICNKNINTLEELYSHLKTEHQKKIFTDHKNLIIPFKFETETLSCYMCSNIFEKFKKLMEHMHKHYGNYMCEICGAGFVTHGSLVSHFECHKVGTFQCDICNKPFNTLYKKNSHVKNVHKPKSKRFRCDFCTERFTEAQKRNVHLSKTHGITSHHIKCRSCDKTFSSKWSMTLHTRRQHLMEKRFKCPDCDMMFFSADELNKHRLKHSGVKEFKCDVCSKSYARRTTLIEHMRIHNDDRRFKCDNCGQAFVQKCSWKGHMKNKHGQIVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -